RTN4RL1 (reticulon 4 receptor like 1) - Rat Genome Database

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Gene: RTN4RL1 (reticulon 4 receptor like 1) Pan paniscus
Analyze
Symbol: RTN4RL1
Name: reticulon 4 receptor like 1
RGD ID: 11919836
Description: ENCODES a protein that exhibits chondroitin sulfate binding (inferred); heparin binding (inferred); signaling receptor activity (inferred); INVOLVED IN corpus callosum development (inferred); negative regulation of axon regeneration (inferred); negative regulation of neuron projection development (inferred); FOUND IN cell surface (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: reticulon-4 receptor-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,513,438 - 9,604,793 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11711,480,463 - 11,572,245 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0171,923,928 - 2,015,415 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1171,813,560 - 1,903,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,813,560 - 1,903,402 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RTN4RL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,513,438 - 9,604,793 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11711,480,463 - 11,572,245 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0171,923,928 - 2,015,415 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1171,813,560 - 1,903,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,813,560 - 1,903,402 (-)Ensemblpanpan1.1panPan2
RTN4RL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38171,934,677 - 2,025,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl171,934,677 - 2,025,334 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,837,971 - 1,928,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,784,721 - 1,874,928 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,784,722 - 1,874,928NCBI
Celera171,854,579 - 1,944,759 (-)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef171,734,309 - 1,824,133 (-)NCBIHuRef
CHM1_1171,846,751 - 1,936,980 (-)NCBICHM1_1
T2T-CHM13v2.0171,823,462 - 1,913,269 (-)NCBIT2T-CHM13v2.0
Rtn4rl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,084,819 - 75,158,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,084,609 - 75,158,595 (+)EnsemblGRCm39 Ensembl
GRCm381175,193,993 - 75,267,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,193,783 - 75,267,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,007,495 - 75,081,264 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,009,996 - 75,083,095 (+)NCBIMGSCv36mm8
Celera1182,700,923 - 82,775,623 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
Rtn4rl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81060,541,584 - 60,615,302 (+)NCBIGRCr8
mRatBN7.21060,043,246 - 60,116,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1060,043,002 - 60,116,978 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1064,689,808 - 64,763,458 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01064,195,390 - 64,269,048 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01059,657,772 - 59,731,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01062,035,866 - 62,109,075 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,035,866 - 62,109,078 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01061,748,820 - 61,822,600 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41062,500,853 - 62,576,593 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11062,514,720 - 62,588,578 (+)NCBI
Celera1059,073,198 - 59,146,878 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rtn4rl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554811,209,429 - 1,280,488 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554811,209,429 - 1,277,309 (+)NCBIChiLan1.0ChiLan1.0
RTN4RL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1946,061,619 - 46,133,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl946,063,391 - 46,133,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha945,212,121 - 45,283,962 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,892,429 - 46,964,775 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl946,892,441 - 46,964,787 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1945,659,776 - 45,731,829 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,956,701 - 46,026,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0946,009,030 - 46,081,152 (-)NCBIUU_Cfam_GSD_1.0
Rtn4rl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560245,147,432 - 45,219,209 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365388,024,634 - 8,097,323 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365388,024,640 - 8,097,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTN4RL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,071,370 - 48,146,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11248,074,375 - 48,146,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,927,352 - 49,995,813 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTN4RL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,576,264 - 1,665,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl161,576,249 - 1,664,947 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605920,302,293 - 20,395,683 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtn4rl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247864,634,268 - 4,703,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247864,634,489 - 4,703,672 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003816857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000036438   ⟹   ENSPPAP00000013764
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl171,813,560 - 1,903,402 (-)Ensembl
RefSeq Acc Id: XM_003816857   ⟹   XP_003816905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2199,513,438 - 9,604,793 (-)NCBI
NHGRI_mPanPan11711,480,463 - 11,572,245 (-)NCBI
Mhudiblu_PPA_v0171,923,928 - 2,015,415 (-)NCBI
PanPan1.1171,813,560 - 1,903,402 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003816905 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013764
  ENSPPAP00000013764.1
RefSeq Acc Id: XP_003816905   ⟸   XM_003816857
- UniProtKB: A0A2R9A915 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000013764   ⟸   ENSPPAT00000036438
Protein Domains
LRRCT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030057 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036438.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Dev_Immune_Receptor UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100982094 UniProtKB/TrEMBL
NCBI Gene RTN4RL1 ENTREZGENE
PANTHER RETICULON-4 RECEPTOR-LIKE 1 UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A2R9A915 ENTREZGENE, UniProtKB/TrEMBL