Rtn4rl1 (reticulon 4 receptor-like 1)

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Gene: Rtn4rl1 (reticulon 4 receptor-like 1) Mus musculus

Analyze

Symbol:

Rtn4rl1

Name:

reticulon 4 receptor-like 1

RGD ID:

737136

MGI Page

MGI

Description:

Is expressed in brain; ganglia; heart; peripheral nervous system; and spinal cord. Orthologous to human RTN4RL1 (reticulon 4 receptor like 1); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Ng; Ngr; Ngr3; Ngrh2; Ngrl2; nogo receptor-like 2; nogo-66 receptor homolog 2; nogo-66 receptor-related protein 3; reticulon-4 receptor-like 1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	75,084,819 - 75,158,595 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	75,084,609 - 75,158,595 (+)	Ensembl
GRCm38	11	75,193,993 - 75,267,769 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	75,193,783 - 75,267,769 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	75,007,495 - 75,081,264 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	75,009,996 - 75,083,095 (+)	NCBI			mm8
Celera	11	82,700,923 - 82,775,623 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1-naphthyl isothiocyanate (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,7-dihydropurine-6-thione (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

C60 fullerene (ISO)

carbon nanotube (EXP)

ciguatoxin CTX1B (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

furan (ISO)

hydralazine (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lipopolysaccharide (EXP)

mercaptopurine (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

phenobarbital (EXP)

poly(I:C) (ISO)

propanal (ISO)

propiconazole (EXP)

purine-6-thiol (ISO)

ritodrine (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

trichostatin A (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

corpus callosum development (IMP)

negative chemotaxis (IBA)

negative regulation of axon regeneration (IMP)

negative regulation of neuron projection development (IMP)

Cellular Component

anchored component of membrane (IEA)

anchored component of plasma membrane (ISO)

cell projection (IEA)

cell surface (ISO)

external side of plasma membrane (ISO)

integral component of membrane (IEA)

membrane (IEA)

membrane raft (ISO)

plasma membrane (IEA)

Molecular Function

chondroitin sulfate binding (IDA)

heparin binding (IBA,IMP)

protein binding (ISO)

Roundabout binding (IBA)

signaling receptor activity (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal bile duct morphology (IEA)

abnormal hepatocyte morphology (IEA)

abnormal neuron physiology (IAGP)

hepatic steatosis (IEA)

improved central nervous system regeneration (IAGP)

References

References - curated


1.	MGD and Homologene mouse data transfer
2.	MGD data from the GO Consortium
3.	MGD IEA
4.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Pignot V, etal., J Neurochem 2003 May;85(3):717-28.
6.	RGD automated import pipeline
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12839991	PMID:14610273	PMID:14664809	PMID:15489334	PMID:16141072	PMID:16141073
PMID:16602821	PMID:18799693	PMID:19884258	PMID:21873635	PMID:22325200	PMID:22406547	PMID:26335717	PMID:27339102	PMID:28558017	PMID:29024660

Genomics

Comparative Map Data

Rtn4rl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	75,084,819 - 75,158,595 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	75,084,609 - 75,158,595 (+)	Ensembl
GRCm38	11	75,193,993 - 75,267,769 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	75,193,783 - 75,267,769 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	75,007,495 - 75,081,264 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	75,009,996 - 75,083,095 (+)	NCBI			mm8
Celera	11	82,700,923 - 82,775,623 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI

RTN4RL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	1,934,677 - 2,025,334 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	1,934,677 - 2,025,334 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	1,837,971 - 1,928,628 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	1,784,721 - 1,874,928 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	1,784,722 - 1,874,928	NCBI
Celera	17	1,854,579 - 1,944,759 (-)	NCBI
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	1,734,309 - 1,824,133 (-)	NCBI		HuRef
CHM1_1	17	1,846,751 - 1,937,441 (-)	NCBI		CHM1_1

Rtn4rl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	60,043,246 - 60,116,977 (+)	NCBI
Rnor_6.0 Ensembl	10	62,035,866 - 62,109,078 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	62,035,866 - 62,109,075 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	61,748,820 - 61,822,600 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	62,500,853 - 62,576,593 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	62,514,720 - 62,588,578 (+)	NCBI
Celera	10	59,073,198 - 59,146,878 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Rtn4rl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	1,209,429 - 1,280,488 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	1,209,429 - 1,277,309 (+)	NCBI	ChiLan1.0	ChiLan1.0

RTN4RL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	1,813,560 - 1,903,402 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	1,813,560 - 1,903,402 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	1,923,928 - 2,015,415 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RTN4RL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	46,063,391 - 46,133,445 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	46,061,619 - 46,133,970 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rtn4rl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936538	8,024,640 - 8,097,558 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTN4RL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	48,071,370 - 48,146,314 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	48,074,375 - 48,146,309 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	49,927,352 - 49,995,813 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RTN4RL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	1,576,264 - 1,665,130 (-)	NCBI
ChlSab1.1 Ensembl	16	1,576,249 - 1,664,947 (-)	Ensembl

Rtn4rl1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	4,634,489 - 4,703,672 (-)	NCBI

Position Markers

Rtn4rl1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B5	UniSTS

Rtn4rl1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B5	UniSTS

Rtn4rl1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B5	UniSTS
cM Map	11	45.76	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42365791	76365904	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42365791	76365904	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44739211	76963931	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62700000	109500000	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63428581	81939647	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63428581	94173092	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64939510	98939647	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64939510	98939647	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64939510	98939647	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66842594	100842826	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66842594	100842826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66842594	100842826	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66842594	100842826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67187365	79923086	Mouse
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68300000	102000000	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70800372	104800540	Mouse
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70800372	104800540	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70800372	104800540	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70800372	104800540	Mouse
1301404	Sbmd4_m	spinal bone mineral density 4 (mouse)			Not determined		11	72128823	106128908	Mouse
1301078	Alcp2_m	alcohol preference locus 2 (mouse)			Not determined		11	72318970	84840636	Mouse
1301310	Tmevd5_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)			Not determined		11	72835299	106835463	Mouse
4142348	Pstc2_m	periosteal circumference 2 (mouse)			Not determined		11	72927789	106927907	Mouse
10043866	Adip19_m	adiposity 19 (mouse)			Not determined		11	72927789	106927907	Mouse
12903994	Opfaq3_m	open field activity QTL 3 (mouse)					11	73846715	82178599	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	657
Count of miRNA genes:	405
Interacting mature miRNAs:	500
Transcripts:	ENSMUST00000102514
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_177708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006533225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK033286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK140456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL603905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY250218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK001304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000102514 ⟹ ENSMUSP00000099572

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	75,193,783 - 75,267,769 (+)	Ensembl

RefSeq Acc Id:

NM_177708 ⟹ NP_808376

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	75,084,819 - 75,158,588 (+)	NCBI
GRCm38	11	75,193,993 - 75,267,762 (+)	NCBI
MGSCv37	11	75,007,495 - 75,081,264 (+)	RGD
Celera	11	82,700,923 - 82,775,623 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GGCAGAATCAGGCCGCCGGCTCGGCGGAGCAAGCCACTCGCCCGGGGCTGAGCGAGCGCACCGC
GTTGGTTGGCAGCGCCGCGGTTGCTAGCAGGCGCCGGTGCCCTGAGCACCGGGTTTGGGCTCAC
CATGCCCCTGCGGGACCGGGCCGCCGGGCACAAGCGGATTCCCGGCTTGCCCCCGCCTCGACGC
GCTCGGATTAGCTGCAGCTGGCGCCCAGGGATTTGAATCTGGACCCCAGGAGGGAGCGCGCCTA
GGCCGACCTCGGAGCGGCGGCCCCGCGGCCAACATGCTTCGCAAAGGGTGCTGTGTGGAATTGC
TGCTGTTGCTGCTCGCTGGAGAGCTACCTCTGGGTGGTGGTTGTCCTCGAGACTGTGTGTGCTA
CCCTGCGCCCATGACTGTCAGCTGCCAGGCACACAACTTTGCTGCCATCCCGGAGGGCATCCCA
GAGGACAGTGAGCGCATCTTCCTGCAGAACAATCGCATCACCTTCCTCCAGCAGGGCCACTTCA
GCCCCGCCATGGTCACCCTCTGGATCTACTCCAACAACATCACTTTCATTGCTCCCAACACCTT
CGAGGGCTTTGTGCATCTGGAGGAGCTAGACCTTGGAGACAACCGACAGCTGCGAACGCTGGCA
CCCGAGACCTTCCAAGGCCTGGTGAAGCTTCACGCCCTCTACCTCTATAAGTGTGGACTGAGCG
CCCTGCCCGCAGGCATCTTTGGTGGCCTGCACAGCCTGCAGTATCTCTACTTGCAGGACAACCA
TATCGAGTACCTCCAAGATGACATCTTTGTGGACCTGGTCAATCTCAGTCACTTGTTTCTCCAT
GGTAACAAGCTATGGAGCCTGGGCCAAGGCATCTTCCGGGGCCTGGTGAACCTGGACCGGTTGC
TGCTGCATGAGAACCAGCTACAGTGGGTTCACCACAAGGCTTTCCATGACCTCCACAGGCTAAC
CACCCTCTTTCTCTTCAACAACAGCCTCACTGAGCTGCAGGGTGACTGTCTGGCCCCCCTGGTG
GCCTTGGAGTTCCTTCGCCTCAATGGGAATGCTTGGGACTGTGGCTGCCGGGCACGTTCCCTGT
GGGAATGGCTGCGAAGGTTCCGTGGCTCTAGCTCTGCTGTCCCCTGCGCGACCCCCGAGCTGCG
GCAAGGCCAGGATCTGAAGCTGCTGAGGGTGGAGGACTTCCGGAACTGCACAGGACCAGTGTCT
CCTCACCAGATCAAGTCTCACACGCTTACCACCTCTGACAGGGCTGCCCGCAAGGAGCACCATC
CGTCCCATGGGGCCTCCAGGGACAAAGGCCACCCACATGGCCATCCGCCTGGCTCCAGGTCAGG
TTACAAGAAGGCAGGCAAGAACTGCACCAGCCACAGGAACCGGAACCAGATCTCTAAGGTGAGC
TCTGGGAAAGAGCTTACCGAACTGCAGGACTATGCCCCCGACTATCAGCACAAGTTCAGCTTTG
ACATCATGCCCACCGCACGACCCAAGAGGAAGGGCAAGTGTGCTCGCAGGACCCCCATCCGTGC
CCCCAGTGGGGTGCAGCAGGCATCCTCAGGCACGGCCCTTGGGGCCCCACTCCTGGCCTGGATA
CTGGGGCTGGCAGTCACTCTCCGCTGAGGACCCAGGGCTCCGTCACCCAGCACTGCCACATGTC
CAGCAAGGAACAGAATTTTTTTCTTCTTTTCTTTCTTTCTTTCTTTTTTTTTTCCTAAGTGGAA
GATCTGCTGGGTTTCAGGAAAAGGCTGCTGAAGCCTTCAGCCACCGTCTGGACCCTTCCTGGTG
GATTATAAGCCCAAAATGTACAGCCGTAGACGGGAAGGGTATCACGTCTCACTCGGCTGTCCTG
ACCGAGCGCCTCTGGACCGTATCCACTCCAGCACAGTGGTCAAAGGCACGCAAAGTGAGTCATT
AGTGGTGTCGGGACATGCGCCCCTTGAAGAAGCTGGGCTCTGCGGAAGCCTGGTCATTTGGAGA
GAAGGGCTGAAGGACCCTGCTGGTTTTGGAAGGAGCAGGACTCAGAACAAGGCTCTCCCAGAGC
CAGCTGGGGCAACCAGCAATCTCAGAGCACTCTTGGCTCTTGTCTGAGATCACTTAGTTAACCT
GCCCTGTCCAACCCTATGCCACCCTCAGTCCCTATCCATGGGGGTAATGCCTCTCATTCCTGAC
GTCTCAGGCAGCCCCCGGCAGACCTGCTGGGGTCCAAGAACCAATCACCAAAGGAGAGATCGCC
AGTGGATGACATTTAGAACTGTACTCGCAATGAGAGTCACACAGAAGGTGCAGTTTTATACCTA
TGTCCACTTATATATATCCTCACTCTGCCCACACACCCACATAATATATATATATATATAAATA
TATAAATGCACAGGTCCCCCAACCCACTCCTTACCAAACTGTATGTCTTATCATGTTTATAAAC
TATACGGGAACCTATATTTGCTCAATTAAGGACTGTATCGGTAACTTCTAGCAAGAAAAAAAAA
AACAAAAAACTGCGGCAATTTTGTTCAGAACCCCAGCCAGCAACAATAGTCCCTGGGCTTGCTG
GGGGCAAAGGTGTCAGTGGGAAGAGTCGGGAAGGAAGAGAAGCAGCAAGAATCACTTCAGGGGA
CCAACATTCTTAGATACTTAGAACATCACCTCGTTTTTATATGCAACACACGCCTGTCTGGCAC
CCCGGAGCACCCCGTCACCCCTACTGTAGAAGCTGCAGACATTAGCGAGAGAAGTGGATGTCAG
GGTGCTGGAGGCAAGCTAGGCGGAGCTGGGGAAGAGGTTTCTGGGGTTTTCAAGCTGGCAGACA
AGGCAGCGTCTACAGTGTTAGTCCAATGGGTTGGATGGACAATGTCCTTCTTAGCACTTTGTGC
AGGCCAGGGAGGCTCTGAGCTCTGGCCTCAGGAGAGGCTTTAGCTGCAGTTTTAACATCTAGGC
TCTTTGGCCAGTGACCTACTGAGGGCCCTGAGTAGTCTGGCAGTGGGAAAAAAATCTAGTGGCC
TTAGCAGATGAGGGTGTTTCAGTAGCCATCTCAGGAACCCTGTATCACAGTGGTCCTGCTCCTC
CTGGATGACCCCAGGACGGGCAGAGGTCAGAGGGCCAGACTCAGGGGTCAGCCCAGAAGGCAGC
CTGCAGGCAAGCCCAGTCAGGGAATAGGGCTGTTGGCCCAAGGGTTTCTGGCAAGCACAGTCTC
TTGTGCTCTGCATAGACAGACCTGAATTCCCTACCAGAGAGGATACCTGAGGAGTAAGAAATGC
TGAATCCAATTAAGAGAGAAAAATAATAATAAAAATTCTCTTGG

hide sequence

RefSeq Acc Id:

XM_006533225 ⟹ XP_006533288

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	75,104,837 - 75,158,595 (+)	NCBI
GRCm38	11	75,214,011 - 75,267,769 (+)	NCBI

Sequence:

show sequence

CTGCTCTCTGCGGTAATGAGGCCGGGAACGGCAGGGATCGATCGCGGCCTGGGGCGGGGTGGGG
GGTGGGGTGGGACTCCCTGTGCCCTCGGGGTGGCATCTCTATCCACCCCAAGCACCGGATTAGG
GAGCCTATTCAATGCACACCCGCATCCTCGCTTTTCCAAGAAGGTCGATGGGAGGGGCGGGTGC
TGTGTGGAATTGCTGCTGTTGCTGCTCGCTGGAGAGCTACCTCTGGGTGGTGGTTGTCCTCGAG
ACTGTGTGTGCTACCCTGCGCCCATGACTGTCAGCTGCCAGGCACACAACTTTGCTGCCATCCC
GGAGGGCATCCCAGAGGACAGTGAGCGCATCTTCCTGCAGAACAATCGCATCACCTTCCTCCAG
CAGGGCCACTTCAGCCCCGCCATGGTCACCCTCTGGATCTACTCCAACAACATCACTTTCATTG
CTCCCAACACCTTCGAGGGCTTTGTGCATCTGGAGGAGCTAGACCTTGGAGACAACCGACAGCT
GCGAACGCTGGCACCCGAGACCTTCCAAGGCCTGGTGAAGCTTCACGCCCTCTACCTCTATAAG
TGTGGACTGAGCGCCCTGCCCGCAGGCATCTTTGGTGGCCTGCACAGCCTGCAGTATCTCTACT
TGCAGGACAACCATATCGAGTACCTCCAAGATGACATCTTTGTGGACCTGGTCAATCTCAGTCA
CTTGTTTCTCCATGGTAACAAGCTATGGAGCCTGGGCCAAGGCATCTTCCGGGGCCTGGTGAAC
CTGGACCGGTTGCTGCTGCATGAGAACCAGCTACAGTGGGTTCACCACAAGGCTTTCCATGACC
TCCACAGGCTAACCACCCTCTTTCTCTTCAACAACAGCCTCACTGAGCTGCAGGGTGACTGTCT
GGCCCCCCTGGTGGCCTTGGAGTTCCTTCGCCTCAATGGGAATGCTTGGGACTGTGGCTGCCGG
GCACGTTCCCTGTGGGAATGGCTGCGAAGGTTCCGTGGCTCTAGCTCTGCTGTCCCCTGCGCGA
CCCCCGAGCTGCGGCAAGGCCAGGATCTGAAGCTGCTGAGGGTGGAGGACTTCCGGAACTGCAC
AGGACCAGTGTCTCCTCACCAGATCAAGTCTCACACGCTTACCACCTCTGACAGGGCTGCCCGC
AAGGAGCACCATCCGTCCCATGGGGCCTCCAGGGACAAAGGCCACCCACATGGCCATCCGCCTG
GCTCCAGGTCAGGTTACAAGAAGGCAGGCAAGAACTGCACCAGCCACAGGAACCGGAACCAGAT
CTCTAAGGTGAGCTCTGGGAAAGAGCTTACCGAACTGCAGGACTATGCCCCCGACTATCAGCAC
AAGTTCAGCTTTGACATCATGCCCACCGCACGACCCAAGAGGAAGGGCAAGTGTGCTCGCAGGA
CCCCCATCCGTGCCCCCAGTGGGGTGCAGCAGGCATCCTCAGGCACGGCCCTTGGGGCCCCACT
CCTGGCCTGGATACTGGGGCTGGCAGTCACTCTCCGCTGAGGACCCAGGGCTCCGTCACCCAGC
ACTGCCACATGTCCAGCAAGGAACAGAATTTTTTTCTTCTTTTCTTTCTTTCTTTCTTTTTTTT
TTCCTAAGTGGAAGATCTGCTGGGTTTCAGGAAAAGGCTGCTGAAGCCTTCAGCCACCGTCTGG
ACCCTTCCTGGTGGATTATAAGCCCAAAATGTACAGCCGTAGACGGGAAGGGTATCACGTCTCA
CTCGGCTGTCCTGACCGAGCGCCTCTGGACCGTATCCACTCCAGCACAGTGGTCAAAGGCACGC
AAAGTGAGTCATTAGTGGTGTCGGGACATGCGCCCCTTGAAGAAGCTGGGCTCTGCGGAAGCCT
GGTCATTTGGAGAGAAGGGCTGAAGGACCCTGCTGGTTTTGGAAGGAGCAGGACTCAGAACAAG
GCTCTCCCAGAGCCAGCTGGGGCAACCAGCAATCTCAGAGCACTCTTGGCTCTTGTCTGAGATC
ACTTAGTTAACCTGCCCTGTCCAACCCTATGCCACCCTCAGTCCCTATCCATGGGGGTAATGCC
TCTCATTCCTGACGTCTCAGGCAGCCCCCGGCAGACCTGCTGGGGTCCAAGAACCAATCACCAA
AGGAGAGATCGCCAGTGGATGACATTTAGAACTGTACTCGCAATGAGAGTCACACAGAAGGTGC
AGTTTTATACCTATGTCCACTTATATATATCCTCACTCTGCCCACACACCCACATAATATATAT
ATATATATAAATATATAAATGCACAGGTCCCCCAACCCACTCCTTACCAAACTGTATGTCTTAT
CATGTTTATAAACTATACGGGAACCTATATTTGCTCAATTAAGGACTGTATCGGTAACTTCTAG
CAAGAAAAAAAAAAACAAAAAACTGCGGCAATTTTGTTCAGAACCCCAGCCAGCAACAATAGTC
CCTGGGCTTGCTGGGGGCAAAGGTGTCAGTGGGAAGAGTCGGGAAGGAAGAGAAGCAGCAAGAA
TCACTTCAGGGGACCAACATTCTTAGATACTTAGAACATCACCTCGTTTTTATATGCAACACAC
GCCTGTCTGGCACCCCGGAGCACCCCGTCACCCCTACTGTAGAAGCTGCAGACATTAGCGAGAG
AAGTGGATGTCAGGGTGCTGGAGGCAAGCTAGGCGGAGCTGGGGAAGAGGTTTCTGGGGTTTTC
AAGCTGGCAGACAAGGCAGCGTCTACAGTGTTAGTCCAATGGGTTGGATGGACAATGTCCTTCT
TAGCACTTTGTGCAGGCCAGGGAGGCTCTGAGCTCTGGCCTCAGGAGAGGCTTTAGCTGCAGTT
TTAACATCTAGGCTCTTTGGCCAGTGACCTACTGAGGGCCCTGAGTAGTCTGGCAGTGGGAAAA
AAATCTAGTGGCCTTAGCAGATGAGGGTGTTTCAGTAGCCATCTCAGGAACCCTGTATCACAGT
GGTCCTGCTCCTCCTGGATGACCCCAGGACGGGCAGAGGTCAGAGGGCCAGACTCAGGGGTCAG
CCCAGAAGGCAGCCTGCAGGCAAGCCCAGTCAGGGAATAGGGCTGTTGGCCCAAGGGTTTCTGG
CAAGCACAGTCTCTTGTGCTCTGCATAGACAGACCTGAATTCCCTACCAGAGAGGATACCTGAG
GAGTAAGAAATGCTGAATCCAATTAAGAGAGAAAAATAATAATAAAAATTCTCTTGGACAAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_808376	(Get FASTA)	NCBI Sequence Viewer
	XP_006533288	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH30471	(Get FASTA)	NCBI Sequence Viewer
	AAP82835	(Get FASTA)	NCBI Sequence Viewer
	BAC28223	(Get FASTA)	NCBI Sequence Viewer
	BAE24396	(Get FASTA)	NCBI Sequence Viewer
	DAA01387	(Get FASTA)	NCBI Sequence Viewer
	EDL12798	(Get FASTA)	NCBI Sequence Viewer
	Q8K0S5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_808376 ⟸ NM_177708
- Peptide Label:	precursor
- UniProtKB:	Q8K0S5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLRKGCCVELLLLLLAGELPLGGGCPRDCVCYPAPMTVSCQAHNFAAIPEGIPEDSERIFLQNN RITFLQQGHFSPAMVTLWIYSNNITFIAPNTFEGFVHLEELDLGDNRQLRTLAPETFQGLVKLH ALYLYKCGLSALPAGIFGGLHSLQYLYLQDNHIEYLQDDIFVDLVNLSHLFLHGNKLWSLGQGI FRGLVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLFNNSLTELQGDCLAPLVALEFLRLNGNA WDCGCRARSLWEWLRRFRGSSSAVPCATPELRQGQDLKLLRVEDFRNCTGPVSPHQIKSHTLTT SDRAARKEHHPSHGASRDKGHPHGHPPGSRSGYKKAGKNCTSHRNRNQISKVSSGKELTELQDY APDYQHKFSFDIMPTARPKRKGKCARRTPIRAPSGVQQASSGTALGAPLLAWILGLAVTLR hide sequence

RefSeq Acc Id:

XP_006533288 ⟸ XM_006533225

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRPGTAGIDRGLGRGGGWGGTPCALGVASLSTPSTGLGSLFNAHPHPRFSKKVDGRGGCCVELL
LLLLAGELPLGGGCPRDCVCYPAPMTVSCQAHNFAAIPEGIPEDSERIFLQNNRITFLQQGHFS
PAMVTLWIYSNNITFIAPNTFEGFVHLEELDLGDNRQLRTLAPETFQGLVKLHALYLYKCGLSA
LPAGIFGGLHSLQYLYLQDNHIEYLQDDIFVDLVNLSHLFLHGNKLWSLGQGIFRGLVNLDRLL
LHENQLQWVHHKAFHDLHRLTTLFLFNNSLTELQGDCLAPLVALEFLRLNGNAWDCGCRARSLW
EWLRRFRGSSSAVPCATPELRQGQDLKLLRVEDFRNCTGPVSPHQIKSHTLTTSDRAARKEHHP
SHGASRDKGHPHGHPPGSRSGYKKAGKNCTSHRNRNQISKVSSGKELTELQDYAPDYQHKFSFD
IMPTARPKRKGKCARRTPIRAPSGVQQASSGTALGAPLLAWILGLAVTLR

hide sequence

RefSeq Acc Id:

ENSMUSP00000099572 ⟸ ENSMUST00000102514

Protein Domains

LRRCT LRRNT

Promoters

RGD ID:

6822016

Promoter ID:

MM_KWN:8493

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney

Transcripts:

OTTMUST00000013970

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	75,007,156 - 75,007,656 (+)	MPROMDB

RGD ID:

6848598

Promoter ID:

MM_TRO:1609

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

MTR015169.11.1638.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	75,078,226 - 75,078,726 (+)	MPROMDB

RGD ID:

8675526

Promoter ID:

EPDNEW_M15794

Type:

single initiation site

Name:

Rtn4rl1_1

Description:

Mus musculus reticulon 4 receptor-like 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	75,193,996 - 75,194,056	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2661375	AgrOrtholog
Ensembl Genes	ENSMUSG00000045287	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000099572	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000102514	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
InterPro	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:237847	UniProtKB/Swiss-Prot
MGD	MGI:2661375	ENTREZGENE
NCBI Gene	237847	ENTREZGENE
Pfam	LRR_8	UniProtKB/Swiss-Prot
PhenoGen	Rtn4rl1	PhenoGen
PROSITE	LRR	UniProtKB/Swiss-Prot
SMART	LRR_TYP	UniProtKB/Swiss-Prot
UniProt	Q8K0S5	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)