Symbol:
GPATCH8
Name:
G-patch domain containing 8
RGD ID:
11917434
Description:
ENCODES a protein that exhibits metal ion binding (inferred); mRNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN hemopoiesis (inferred); mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
G patch domain-containing protein 8
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 20,406,734 - 20,514,961 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 22,370,544 - 22,478,771 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 12,896,035 - 13,004,212 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 13,064,076 - 13,170,930 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 13,064,076 - 13,170,930 (+) Ensembl panpan1.1 panPan2
JBrowse:
View Region in Genome Browser (JBrowse)
Model
GPATCH8 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 20,406,734 - 20,514,961 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 22,370,544 - 22,478,771 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 12,896,035 - 13,004,212 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 13,064,076 - 13,170,930 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 13,064,076 - 13,170,930 (+) Ensembl panpan1.1 panPan2
GPATCH8 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 44,395,281 - 44,503,406 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 44,395,281 - 44,503,430 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 42,472,649 - 42,580,774 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 39,828,175 - 39,936,328 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 17 39,182,234 - 39,290,985 (-) NCBI Celera Cytogenetic Map 17 q21.31 NCBI HuRef 17 38,236,535 - 38,345,349 (-) NCBI HuRef CHM1_1 17 42,708,248 - 42,817,013 (-) NCBI CHM1_1 T2T-CHM13v2.0 17 45,249,263 - 45,357,414 (-) NCBI T2T-CHM13v2.0
Gpatch8 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 102,366,737 - 102,447,217 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 102,366,741 - 102,447,218 (-) Ensembl GRCm39 Ensembl GRCm38 11 102,475,911 - 102,556,391 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 102,475,915 - 102,556,392 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 102,337,229 - 102,417,472 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 102,584,956 - 102,665,459 (-) NCBI MGSCv36 mm8 Celera 11 114,186,111 - 114,266,424 (-) NCBI Celera Cytogenetic Map 11 D- E1 NCBI cM Map 11 66.31 NCBI
Gpatch8 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 87,932,174 - 88,012,523 (-) NCBI GRCr8 mRatBN7.2 10 87,432,020 - 87,512,594 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 87,433,266 - 87,512,419 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 92,469,043 - 92,549,180 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 91,934,409 - 92,014,754 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 87,327,744 - 87,408,095 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 90,421,443 - 90,501,996 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 90,421,442 - 90,501,819 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 90,209,814 - 90,293,852 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 91,580,259 - 91,660,338 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 10 86,140,497 - 86,219,812 (-) NCBI Celera Cytogenetic Map 10 q32.1 NCBI
Gpatch8 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955451 17,397,096 - 17,463,399 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955451 17,395,106 - 17,463,399 (-) NCBI ChiLan1.0 ChiLan1.0
GPATCH8 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 18,927,894 - 19,044,989 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 18,927,989 - 19,049,591 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 18,317,615 - 18,434,673 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 19,621,527 - 19,739,285 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 19,621,609 - 19,739,285 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 18,475,768 - 18,593,104 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 18,659,043 - 18,776,081 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 18,803,243 - 18,920,360 (+) NCBI UU_Cfam_GSD_1.0
Gpatch8
GPATCH8 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 18,776,560 - 18,856,566 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 18,776,504 - 18,856,479 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 19,124,684 - 19,142,082 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GPATCH8 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 16 61,883,810 - 61,996,089 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 16 61,883,809 - 61,996,259 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666077 32,648,670 - 32,761,840 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gpatch8
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSPPAT00000058314 ⟹ ENSPPAP00000035426
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 17 13,064,076 - 13,170,930 (+) Ensembl
Ensembl Acc Id:
ENSPPAT00000058320 ⟹ ENSPPAP00000035432
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 17 13,088,658 - 13,168,622 (+) Ensembl
RefSeq Acc Id:
XM_003805879 ⟹ XP_003805927
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,406,734 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,370,544 - 22,478,771 (+) NCBI Mhudiblu_PPA_v0 17 12,896,037 - 13,004,212 (+) NCBI PanPan1.1 17 13,064,076 - 13,170,930 (+) NCBI
Sequence:
CGCTCCGGGTCGCGCGCGGAGCAGGGGCTAGAGGGAAGGGTCAGCCTCCAGGGCTGGCAGGCGCCTGCGCCGCGGGGCTCCCGTCAGGACGCGCATTCTCGCTCCCTCCCTCGGCTGCGCGCGCCCGG
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RefSeq Acc Id:
XM_003805880 ⟹ XP_003805928
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,407,008 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,370,821 - 22,478,771 (+) NCBI Mhudiblu_PPA_v0 17 12,896,205 - 13,004,212 (+) NCBI PanPan1.1 17 13,064,076 - 13,170,930 (+) NCBI
Sequence:
CGCTCCGGGTCGCGCGCGGAGCAGGGGCTAGAGGGAAGGGTCAGCCTCCAGGGCTGGCAGGCGC
hide sequence
RefSeq Acc Id:
XM_055101739 ⟹ XP_054957714
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,435,478 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,399,283 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XM_055101740 ⟹ XP_054957715
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,436,643 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,400,449 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XM_055101742 ⟹ XP_054957717
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,407,008 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,370,821 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XM_055101743 ⟹ XP_054957718
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,435,478 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,399,283 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XM_055101744 ⟹ XP_054957719
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,436,630 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,400,441 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XM_055101745 ⟹ XP_054957720
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 19 20,435,518 - 20,514,961 (+) NCBI NHGRI_mPanPan1 17 22,399,320 - 22,478,771 (+) NCBI
RefSeq Acc Id:
XP_003805928 ⟸ XM_003805880
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
- Sequence:
MGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQA
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RefSeq Acc Id:
XP_003805927 ⟸ XM_003805879
- Peptide Label:
isoform X1
- UniProtKB:
A0A2R9C121 (UniProtKB/TrEMBL), A0A2R9C0K0 (UniProtKB/TrEMBL)
- Sequence:
MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQ
hide sequence
Ensembl Acc Id:
ENSPPAP00000035426 ⟸ ENSPPAT00000058314
Ensembl Acc Id:
ENSPPAP00000035432 ⟸ ENSPPAT00000058320
RefSeq Acc Id:
XP_054957717 ⟸ XM_055101742
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_054957718 ⟸ XM_055101743
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_054957714 ⟸ XM_055101739
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_054957720 ⟸ XM_055101745
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_054957719 ⟸ XM_055101744
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_054957715 ⟸ XM_055101740
- Peptide Label:
isoform X2
- UniProtKB:
A0A2R9C0K0 (UniProtKB/TrEMBL)
