GPATCH8 (G-patch domain containing 8) - Rat Genome Database

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Gene: GPATCH8 (G-patch domain containing 8) Pan paniscus
Analyze
Symbol: GPATCH8
Name: G-patch domain containing 8
RGD ID: 11917434
Description: ENCODES a protein that exhibits metal ion binding (inferred); nucleic acid binding (inferred); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G patch domain-containing protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,406,734 - 20,514,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,370,544 - 22,478,771 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01712,896,035 - 13,004,212 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,064,076 - 13,170,930 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,064,076 - 13,170,930 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPATCH8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,406,734 - 20,514,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,370,544 - 22,478,771 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01712,896,035 - 13,004,212 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,064,076 - 13,170,930 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,064,076 - 13,170,930 (+)Ensemblpanpan1.1panPan2
GPATCH8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381744,395,281 - 44,503,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1744,395,281 - 44,503,430 (-)EnsemblGRCh38hg38GRCh38
GRCh371742,472,649 - 42,580,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,828,175 - 39,936,328 (-)NCBINCBI36Build 36hg18NCBI36
Celera1739,182,234 - 39,290,985 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1738,236,535 - 38,345,349 (-)NCBIHuRef
CHM1_11742,708,248 - 42,817,013 (-)NCBICHM1_1
T2T-CHM13v2.01745,249,263 - 45,357,414 (-)NCBIT2T-CHM13v2.0
Gpatch8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,366,737 - 102,447,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,366,741 - 102,447,218 (-)EnsemblGRCm39 Ensembl
GRCm3811102,475,911 - 102,556,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,475,915 - 102,556,392 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,337,229 - 102,417,472 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,584,956 - 102,665,459 (-)NCBIMGSCv36mm8
Celera11114,186,111 - 114,266,424 (-)NCBICelera
Cytogenetic Map11D- E1NCBI
cM Map1166.31NCBI
Gpatch8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,932,174 - 88,012,523 (-)NCBIGRCr8
mRatBN7.21087,432,020 - 87,512,594 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1087,433,266 - 87,512,419 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1092,469,043 - 92,549,180 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,934,409 - 92,014,754 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01087,327,744 - 87,408,095 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01090,421,443 - 90,501,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,421,442 - 90,501,819 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,209,814 - 90,293,852 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,580,259 - 91,660,338 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1086,140,497 - 86,219,812 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Gpatch8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,397,096 - 17,463,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,395,106 - 17,463,399 (-)NCBIChiLan1.0ChiLan1.0
GPATCH8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1918,927,894 - 19,044,989 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl918,927,989 - 19,049,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,317,615 - 18,434,673 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,621,527 - 19,739,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl919,621,609 - 19,739,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1918,475,768 - 18,593,104 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,659,043 - 18,776,081 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0918,803,243 - 18,920,360 (+)NCBIUU_Cfam_GSD_1.0
Gpatch8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,266,883 - 18,360,911 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541832,848 - 928,083 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541833,687 - 927,802 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,776,560 - 18,856,566 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,776,504 - 18,856,479 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,124,684 - 19,142,082 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11661,883,810 - 61,996,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1661,883,809 - 61,996,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607732,648,670 - 32,761,840 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpatch8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624795603,315 - 678,726 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624795603,129 - 680,510 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003805880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008976226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000058314   ⟹   ENSPPAP00000035426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1713,064,076 - 13,170,930 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000058320   ⟹   ENSPPAP00000035432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1713,088,658 - 13,168,622 (+)Ensembl
RefSeq Acc Id: XM_003805879   ⟹   XP_003805927
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,406,734 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,370,544 - 22,478,771 (+)NCBI
Mhudiblu_PPA_v01712,896,037 - 13,004,212 (+)NCBI
PanPan1.11713,064,076 - 13,170,930 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003805880   ⟹   XP_003805928
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,407,008 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,370,821 - 22,478,771 (+)NCBI
Mhudiblu_PPA_v01712,896,205 - 13,004,212 (+)NCBI
PanPan1.11713,064,076 - 13,170,930 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055101739   ⟹   XP_054957714
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,435,478 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,399,283 - 22,478,771 (+)NCBI
RefSeq Acc Id: XM_055101740   ⟹   XP_054957715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,436,643 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,400,449 - 22,478,771 (+)NCBI
RefSeq Acc Id: XM_055101742   ⟹   XP_054957717
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,407,008 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,370,821 - 22,478,771 (+)NCBI
RefSeq Acc Id: XM_055101743   ⟹   XP_054957718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,435,478 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,399,283 - 22,478,771 (+)NCBI
RefSeq Acc Id: XM_055101744   ⟹   XP_054957719
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,436,630 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,400,441 - 22,478,771 (+)NCBI
RefSeq Acc Id: XM_055101745   ⟹   XP_054957720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21920,435,518 - 20,514,961 (+)NCBI
NHGRI_mPanPan11722,399,320 - 22,478,771 (+)NCBI
RefSeq Acc Id: XP_003805928   ⟸   XM_003805880
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003805927   ⟸   XM_003805879
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C121 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000035426   ⟸   ENSPPAT00000058314
Ensembl Acc Id: ENSPPAP00000035432   ⟸   ENSPPAT00000058320
RefSeq Acc Id: XP_054957717   ⟸   XM_055101742
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054957718   ⟸   XM_055101743
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054957714   ⟸   XM_055101739
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054957720   ⟸   XM_055101745
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054957719   ⟸   XM_055101744
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054957715   ⟸   XM_055101740
- Peptide Label: isoform X2
Protein Domains
C2H2-type   G-patch


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058314.1 UniProtKB/TrEMBL
  ENSPPAT00000058320.1 UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  ZnF-G_patch_domain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100991524 UniProtKB/TrEMBL
NCBI Gene GPATCH8 ENTREZGENE
PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
  ZINC FINGER-CONTAINING UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9C0K0_PANPA UniProtKB/TrEMBL
  A0A2R9C121 ENTREZGENE, UniProtKB/TrEMBL