Advanced Search (OLGA)

Gene: ARGLU1 (arginine and glutamate rich 1) Pan paniscus

Analyze

Symbol:

ARGLU1

Name:

arginine and glutamate rich 1

RGD ID:

11897061

Description:

ENCODES a protein that exhibits cadherin binding (inferred); pre-mRNA binding (inferred); transcription coactivator activity (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); regulation of alternative mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred); nuclear speck (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

arginine and glutamate-rich protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	108,040,331 - 108,065,175 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	106,720,660 - 106,745,507 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	87,683,306 - 87,708,108 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	106,823,229 - 106,847,933 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	106,823,229 - 106,847,933 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA)

regulation of alternative mRNA splicing, via spliceosome (IEA)

Cellular Component

cytosol (IEA)

mitochondrion (IEA)

nuclear speck (IEA)

nucleoplasm (IEA)

Molecular Function

cadherin binding (IEA)

pre-mRNA binding (IEA)

protein binding (ISO)

transcription coactivator activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ARGLU1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	108,040,331 - 108,065,175 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	106,720,660 - 106,745,507 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	87,683,306 - 87,708,108 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	106,823,229 - 106,847,933 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	106,823,229 - 106,847,933 (-)	Ensembl	panpan1.1		panPan2

ARGLU1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	106,541,673 - 106,568,137 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	106,541,673 - 106,568,137 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	107,194,021 - 107,220,485 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	105,993,663 - 106,018,515 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	88,039,892 - 88,064,742 (-)	NCBI		Celera
Cytogenetic Map	13	q33.3	NCBI
HuRef	13	87,787,076 - 87,811,929 (-)	NCBI		HuRef
CHM1_1	13	107,164,330 - 107,189,194 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	105,762,093 - 105,788,553 (-)	NCBI		T2T-CHM13v2.0

Arglu1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	8,716,307 - 8,741,818 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	8,715,075 - 8,740,521 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	8,666,297 - 8,690,550 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	8,665,075 - 8,690,521 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	8,666,576 - 8,690,537 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	8,666,548 - 8,690,493 (-)	NCBI		MGSCv36	mm8
Celera	8	8,839,215 - 8,862,964 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	3.57	NCBI

Arglu1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	87,455,097 - 87,479,148 (+)	NCBI		GRCr8
mRatBN7.2	16	80,753,300 - 80,777,350 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	80,753,315 - 80,777,349 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	86,032,336 - 86,056,378 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	89,484,947 - 89,508,989 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	84,729,373 - 84,753,409 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	86,600,877 - 86,625,084 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	86,600,877 - 86,625,083 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	86,014,418 - 86,038,237 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	86,143,399 - 86,181,601 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	86,129,438 - 86,167,640 (+)	NCBI
Celera	16	78,531,608 - 78,555,458 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Arglu1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	4,962,000 - 4,980,226 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	4,962,000 - 4,980,226 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARGLU1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	55,616,498 - 55,640,157 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	55,616,977 - 55,639,784 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	55,374,265 - 55,397,955 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	56,128,655 - 56,152,154 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	56,126,981 - 56,152,126 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	55,721,376 - 55,745,016 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	55,708,193 - 55,731,591 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	55,746,940 - 55,770,656 (-)	NCBI		UU_Cfam_GSD_1.0

Arglu1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	190,819,302 - 190,846,313 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	5,105,269 - 5,134,313 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	5,105,836 - 5,131,294 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARGLU1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	74,239,419 - 74,267,379 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	74,241,089 - 74,267,416 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	81,617,834 - 81,644,114 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARGLU1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	84,958,279 - 84,983,102 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666046	41,521,231 - 41,546,048 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arglu1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	5,059,644 - 5,085,572 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	5,059,826 - 5,083,362 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003832070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055096987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004666005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000037648 ⟹ ENSPPAP00000014960

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	13	106,823,229 - 106,847,933 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000037651 ⟹ ENSPPAP00000014963

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	13	106,823,890 - 106,839,356 (-)	Ensembl

RefSeq Acc Id:

XM_003832070 ⟹ XP_003832118

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	108,040,331 - 108,065,175 (-)	NCBI
NHGRI_mPanPan1	13	106,720,660 - 106,745,507 (-)	NCBI
Mhudiblu_PPA_v0	13	87,683,306 - 87,708,108 (-)	NCBI
PanPan1.1	13	106,823,229 - 106,847,933 (-)	NCBI

Sequence:

show sequence

GTGGGAAGGGCGGCCGGTGCAGCCGCAGCTGCCATCTTAGGGACGCCTGGCGCTACGGGTTTCT
CGTTGGAGGCGGCCTTCGTGGCAGCTGTAGACGCCGGGAAAAGGCATAAAGTCTGTCGGCCGAC
ACCTTTCTTTCCTCCGGCCTCGGTAGAACCGCCAGCCCGCGTTCGAAGGCGGAGGCGAGGGGAA
CTGGCCGCGTGAGGGGCCTGAGGCGAGCGGTTAGAGCGTCTCCCGGAAGGATGGGCCGGTCTCG
GAGCCGGAGCTCGTCCCGCTCCAAGCACACCAAGAGCAGCAAGCACAACAAGAAGCGCAGCCGG
TCCCGGTCGCGATCCCGGGACAAGGAGCGCGTGCGGAAGCGTTCCAAATCTCGGGAAAGTAAAC
GGAACCGGCGGCGGGAGTCGCGGTCCCGTTCGCGCTCCACCAACACGGCCGTGTCCCGGCGCGA
GCGGGACCGGGAGCGCGCCTCGTCCCCGCCCGACCGCATCGACATCTTCGGGCGCACGGTGAGC
AAGCGCAGCAGCCTGGACGAGAAGCAGAAGCGAGAGGAGGAGGAGAAGAAAGCGGAGTTCGAGC
GGCAGCGAAAAATTCGACAGCAAGAAATAGAAGAAAAACTCATCGAGGAAGAAACAGCACGAAG
AGTAGAAGAATTGGTGGCAAAAAGGGTGGAGGAAGAACTGGAGAAAAGGAAGGATGAAATTGAA
CGAGAAGTTCTCCGAAGGGTGGAGGAAGCCAAACGCATCATGGAAAAGCAGTTGCTCGAAGAAC
TCGAGCGACAGAGACAAGCTGAGCTTGCAGCACAAAAAGCTAGAGAGGAGGAAGAACGTGCAAA
ACGTGAGGAGCTAGAGCGAATACTGGAAGAGAATAACCGAAAAATTGCAGAAGCACAAGCCAAA
CTGGCCGAAGAACAGTTGAGAATTGTTGAAGAACAAAGAAAGATTCATGAGGAAAGGATGAAAC
TAGAACAAGAACGACAACGTCAACAAAAAGAAGAACAAAAAATTATCCTGGGCAAGGGGAAGTC
CAGGCCAAAACTGTCCTTCTCATTAAAAACCCAGGATTAAATTGCAAACTCTGAACTTTTTACA
AAGAAAAATGGAAAAACTTTGTATGGTAGCTTCATGTTGAAGTGGTTTTTTGTTTTTGTTTTTG
TTTTTTTAATTTGTAAAATCTGGAAAGTTAGCTTGTTCTAATAGGGGCTATGCTCTGCAATTCC
CTTTTTTTTTTTCCTTCCACTAAGTCAAATCCTTATCAGATCATTGTTGTATTCTAAGGAGTGA
CGTATTTTTCACCTGTTTGGATTCTATATTAGTGGTCTGAGGAAGAGCAGATCACATTGTAAAA
CTATGGATGGTCTGATAAGGCTTTTACTGACCCCACTGACTTCAGAGTTATACTCTGTTTGCTA
CATCATAATGCTGGTTTTGCTGACTTTTTGTTTTTTATATATTTATAAAAAAGAAAAAGTTGGT
GATTGCATTGGGAAATTCCCAGGGTATTACTGGACCTATGTGGTGTATTGTTAAACCAGTGTCC
TTGTGATACTGTTGCTCTTGATGTTCCTGATACAGGTAAGGAAACAGTTGGTCAACTCTGATAC
AAAGTATATATACAGTTCAGTATTGTCTCTGTTCATTTTGTTTTTATTTCATTGACAAAATCAA
ACCAGCATTCCCCATTGTGTAAATAAATGATTTTGCTGAATAAAGTAAAGTCTTAAATTCA

hide sequence

RefSeq Acc Id:

XM_055096987 ⟹ XP_054952962

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	108,054,115 - 108,065,175 (-)	NCBI
NHGRI_mPanPan1	13	106,734,385 - 106,745,507 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003832118	(Get FASTA)	NCBI Sequence Viewer
	XP_054952962	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000014960.1
	ENSPPAP00000014963.1

RefSeq Acc Id:	XP_003832118 ⟸ XM_003832070
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9ACG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRSRSRSSSRSKHTKSSKHNKKRSRSRSRSRDKERVRKRSKSRESKRNRRRESRSRSRSTNTA VSRRERDRERASSPPDRIDIFGRTVSKRSSLDEKQKREEEEKKAEFERQRKIRQQEIEEKLIEE ETARRVEELVAKRVEEELEKRKDEIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKAREE EERAKREELERILEENNRKIAEAQAKLAEEQLRIVEEQRKIHEERMKLEQERQRQQKEEQKIIL GKGKSRPKLSFSLKTQD hide sequence

Ensembl Acc Id:

ENSPPAP00000014963 ⟸ ENSPPAT00000037651

Ensembl Acc Id:

ENSPPAP00000014960 ⟸ ENSPPAT00000037648

RefSeq Acc Id:	XP_054952962 ⟸ XM_055096987
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000030646	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000037648.1	UniProtKB/TrEMBL
	ENSPPAT00000037651.1	UniProtKB/TrEMBL
InterPro	ARGLU1	UniProtKB/TrEMBL
KEGG Report	pps:100972018	UniProtKB/TrEMBL
NCBI Gene	ARGLU1	ENTREZGENE
PANTHER	ARGININE AND GLUTAMATE-RICH PROTEIN 1	UniProtKB/TrEMBL
	PTHR31711	UniProtKB/TrEMBL
Pfam	ARGLU	UniProtKB/TrEMBL
UniProt	A0A2R9ACG3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AHC9_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar