TDRD5 (tudor domain containing 5) - Rat Genome Database

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Gene: TDRD5 (tudor domain containing 5) Pan paniscus
Analyze
Symbol: TDRD5
Name: tudor domain containing 5
RGD ID: 11896951
Description: INVOLVED IN cell differentiation (inferred); germ cell development (inferred); P granule organization (inferred); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tudor domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2170,076,801 - 70,168,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,735,088 - 69,827,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,080,083 - 155,171,734 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,761,004 - 158,852,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,761,013 - 158,852,660 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatoid body  (IEA)
cytoplasm  (IEA)
pi-body  (IEA)
synapse  (IEA,ISO)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TDRD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2170,076,801 - 70,168,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,735,088 - 69,827,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,080,083 - 155,171,734 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,761,004 - 158,852,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,761,013 - 158,852,660 (+)Ensemblpanpan1.1panPan2
TDRD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,591,613 - 179,691,272 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,591,613 - 179,691,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371179,560,748 - 179,660,407 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,827,648 - 177,927,021 (+)NCBINCBI36Build 36hg18NCBI36
Build 341176,292,681 - 176,392,055NCBI
Celera1152,668,657 - 152,768,022 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1150,787,367 - 150,892,229 (+)NCBIHuRef
CHM1_11180,984,584 - 181,084,212 (+)NCBICHM1_1
T2T-CHM13v2.01178,946,579 - 179,047,028 (+)NCBIT2T-CHM13v2.0
Tdrd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,082,866 - 156,131,874 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,082,866 - 156,131,234 (-)EnsemblGRCm39 Ensembl
GRCm381156,255,296 - 156,304,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,255,296 - 156,303,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,185,426 - 158,233,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,091,972 - 158,140,386 (-)NCBIMGSCv36mm8
Celera1158,643,481 - 158,698,126 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map167.71NCBI
Tdrd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81370,944,441 - 70,992,345 (-)NCBIGRCr8
mRatBN7.21368,394,180 - 68,447,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1368,394,061 - 68,441,319 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,973,408 - 71,020,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01372,293,668 - 72,340,815 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01369,555,150 - 69,602,299 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01373,872,637 - 73,922,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,872,621 - 73,921,969 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01378,797,043 - 78,846,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41371,241,498 - 71,288,876 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11371,248,263 - 71,303,062 (-)NCBI
Celera1368,255,530 - 68,302,259 (-)NCBICelera
Cytogenetic Map13q22NCBI
Tdrd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540618,895,011 - 18,962,333 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540618,895,010 - 18,961,200 (+)NCBIChiLan1.0ChiLan1.0
TDRD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1720,259,940 - 20,348,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl720,261,630 - 20,348,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha719,785,974 - 19,872,623 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0719,997,378 - 20,084,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl719,997,296 - 20,078,982 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1719,906,289 - 19,993,027 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0720,012,629 - 20,099,376 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0720,148,162 - 20,234,920 (-)NCBIUU_Cfam_GSD_1.0
Tdrd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934491,571,577 - 91,640,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364819,418,641 - 9,485,386 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364819,418,512 - 9,485,388 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,211,960 - 121,333,220 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,245,080 - 121,337,339 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,061,343 - 133,143,161 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,676,952 - 49,771,381 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2549,677,283 - 49,769,442 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605551,101,482 - 51,195,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247712,711,791 - 2,818,031 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000045302   ⟹   ENSPPAP00000022493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1158,761,013 - 158,852,660 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000045306   ⟹   ENSPPAP00000022495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1158,761,013 - 158,852,660 (+)Ensembl
RefSeq Acc Id: XM_003824709   ⟹   XP_003824757
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,801 - 70,168,659 (-)NCBI
NHGRI_mPanPan1169,735,088 - 69,826,944 (-)NCBI
Mhudiblu_PPA_v01155,080,083 - 155,171,734 (+)NCBI
PanPan1.11158,761,004 - 158,852,660 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008978372   ⟹   XP_008976620
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,803 - 70,168,525 (-)NCBI
NHGRI_mPanPan1169,735,090 - 69,826,810 (-)NCBI
Mhudiblu_PPA_v01155,080,383 - 155,171,734 (+)NCBI
PanPan1.11158,761,264 - 158,852,660 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055111037   ⟹   XP_054967012
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,803 - 70,168,740 (-)NCBI
NHGRI_mPanPan1169,735,090 - 69,827,025 (-)NCBI
RefSeq Acc Id: XM_055111038   ⟹   XP_054967013
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,803 - 70,168,463 (-)NCBI
NHGRI_mPanPan1169,735,090 - 69,826,748 (-)NCBI
RefSeq Acc Id: XM_055111039   ⟹   XP_054967014
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,801 - 70,168,463 (-)NCBI
NHGRI_mPanPan1169,735,088 - 69,826,748 (-)NCBI
RefSeq Acc Id: XM_057301998   ⟹   XP_057157981
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2170,076,801 - 70,168,470 (-)NCBI
NHGRI_mPanPan1169,735,088 - 69,826,755 (-)NCBI
RefSeq Acc Id: XP_003824757   ⟸   XM_003824709
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008976620   ⟸   XM_008978372
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZT9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000022495   ⟸   ENSPPAT00000045306
Ensembl Acc Id: ENSPPAP00000022493   ⟸   ENSPPAT00000045302
RefSeq Acc Id: XP_054967012   ⟸   XM_055111037
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054967013   ⟸   XM_055111038
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054967014   ⟸   XM_055111039
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AZ49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157981   ⟸   XM_057301998
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AZ49 (UniProtKB/TrEMBL)
Protein Domains
HTH OST-type   Tudor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045302.1 UniProtKB/TrEMBL
  ENSPPAT00000045306.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/TrEMBL
  3.30.420.610 UniProtKB/TrEMBL
InterPro LOTUS-like UniProtKB/TrEMBL
  OST-HTH/LOTUS_dom UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/TrEMBL
  TDRD5_LOTUS_2 UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor_domain_containing UniProtKB/TrEMBL
KEGG Report pps:100993049 UniProtKB/TrEMBL
NCBI Gene TDRD5 ENTREZGENE
PANTHER TUDOR DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  TUDOR DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
Pfam OST-HTH UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
PROSITE HTH_OST UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
SMART TUDOR UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A2R9AZ49 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AZT9 ENTREZGENE, UniProtKB/TrEMBL