LSAMP (limbic system associated membrane protein) - Rat Genome Database

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Gene: LSAMP (limbic system associated membrane protein) Pan paniscus
Analyze
Symbol: LSAMP
Name: limbic system associated membrane protein
RGD ID: 11895326
Description: INVOLVED IN locomotory exploration behavior (ortholog); FOUND IN postsynaptic membrane (ortholog); presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22113,806,256 - 114,436,270 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13113,812,916 - 114,441,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03112,952,837 - 113,582,708 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13119,869,117 - 120,496,648 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3119,871,236 - 120,496,120 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LSAMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22113,806,256 - 114,436,270 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13113,812,916 - 114,441,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03112,952,837 - 113,582,708 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13119,869,117 - 120,496,648 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3119,871,236 - 120,496,120 (-)Ensemblpanpan1.1panPan2
LSAMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383115,802,374 - 116,445,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3115,802,374 - 117,997,592 (-)EnsemblGRCh38hg38GRCh38
GRCh373115,521,221 - 116,164,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363117,011,832 - 117,647,068 (-)NCBINCBI36Build 36hg18NCBI36
Build 343117,011,833 - 117,647,068NCBI
Celera3113,929,271 - 114,572,430 (-)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3112,897,118 - 113,540,663 (-)NCBIHuRef
CHM1_13115,484,952 - 116,127,889 (-)NCBICHM1_1
T2T-CHM13v2.03118,522,573 - 119,165,711 (-)NCBIT2T-CHM13v2.0
Lsamp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391639,804,674 - 42,002,042 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1639,804,723 - 41,229,914 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1641,353,220 - 42,002,042 (+)EnsemblGRCm39 Ensembl
GRCm381639,984,254 - 42,181,679 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1639,984,361 - 42,181,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv371641,533,455 - 42,146,326 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361641,452,674 - 42,065,545 (+)NCBIMGSCv36mm8
Celera1641,901,502 - 42,509,283 (+)NCBICelera
Cytogenetic Map16B4NCBI
Lsamp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,053,285 - 74,223,019 (-)NCBIGRCr8
mRatBN7.21158,547,533 - 60,717,328 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,554,805 - 60,717,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,367,903 - 68,009,280 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01160,030,195 - 60,671,566 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01159,072,347 - 59,731,794 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01158,795,884 - 59,442,772 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1158,803,140 - 59,110,562 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01162,949,745 - 63,593,038 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41160,170,406 - 60,870,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11160,227,994 - 60,928,464 (-)NCBI
Celera1158,097,179 - 58,730,179 (-)NCBICelera
Cytogenetic Map11q21NCBI
Lsamp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542715,873,278 - 17,911,903 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542715,871,178 - 16,475,975 (-)NCBIChiLan1.0ChiLan1.0
LSAMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13319,833,604 - 20,478,800 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3319,841,111 - 20,478,776 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3319,939,960 - 20,579,121 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03320,079,910 - 20,727,054 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3320,082,975 - 20,727,018 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13319,886,366 - 20,530,790 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03319,934,283 - 20,567,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03320,478,555 - 21,125,027 (-)NCBIUU_Cfam_GSD_1.0
Lsamp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602133,775,828 - 134,368,441 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365363,161,345 - 3,745,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365363,161,009 - 3,746,148 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSAMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13143,675,575 - 144,304,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113143,675,521 - 144,304,186 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LSAMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12264,423,191 - 65,069,462 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041101,324,436 - 101,959,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsamp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473131,872,494 - 32,542,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473131,872,211 - 32,550,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000053496   ⟹   ENSPPAP00000030633
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3119,871,236 - 120,496,120 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000053501   ⟹   ENSPPAP00000030638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3119,871,236 - 120,496,072 (-)Ensembl
RefSeq Acc Id: XM_024928236   ⟹   XP_024784004
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22113,806,256 - 114,436,270 (-)NCBI
NHGRI_mPanPan13113,812,916 - 114,441,047 (-)NCBI
Mhudiblu_PPA_v03112,952,837 - 113,582,708 (-)NCBI
PanPan1.13119,869,117 - 120,496,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034957145   ⟹   XP_034813036
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22113,806,256 - 114,436,267 (-)NCBI
NHGRI_mPanPan13113,812,916 - 114,441,044 (-)NCBI
Mhudiblu_PPA_v03112,952,837 - 113,582,705 (-)NCBI
Protein Sequences
Protein RefSeqs XP_024784004 (Get FASTA)   NCBI Sequence Viewer  
  XP_034813036 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000030633.1
  ENSPPAP00000030638
  ENSPPAP00000030638.1
RefSeq Acc Id: XP_024784004   ⟸   XM_024928236
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BMM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034813036   ⟸   XM_034957145
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BML3 (UniProtKB/TrEMBL),   A0A2R9BMM1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000030633   ⟸   ENSPPAT00000053496
Ensembl Acc Id: ENSPPAP00000030638   ⟸   ENSPPAT00000053501
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038302 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053496.1 UniProtKB/TrEMBL
  ENSPPAT00000053501.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IgLON_domain UniProtKB/TrEMBL
NCBI Gene LSAMP ENTREZGENE
PANTHER IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/TrEMBL
  NEUROTRIMIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9BML3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BMM1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-13 LSAMP  limbic system associated membrane protein    limbic system-associated membrane protein  Symbol and/or name change 5135510 APPROVED