A4GALT (alpha 1,4-galactosyltransferase (P1PK blood group)) - Rat Genome Database

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Gene: A4GALT (alpha 1,4-galactosyltransferase (P1PK blood group)) Pan paniscus
Analyze
Symbol: A4GALT
Name: alpha 1,4-galactosyltransferase (P1PK blood group)
RGD ID: 11889666
Description: ENCODES a protein that exhibits galactosyltransferase activity (ortholog); INVOLVED IN globoside biosynthetic process (ortholog); plasma membrane organization (ortholog); ASSOCIATED WITH Burkitt lymphoma (ortholog); Caffey disease (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha 1,4-galactosyltransferase; alpha 1,4-galactosyltransferase (P blood group); lactosylceramide 4-alpha-galactosyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,527,174 - 52,555,260 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,219,627 - 55,247,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,587,378 - 23,615,467 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12241,738,285 - 41,765,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2241,739,062 - 41,740,123 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
A4GALT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,527,174 - 52,555,260 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,219,627 - 55,247,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,587,378 - 23,615,467 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12241,738,285 - 41,765,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2241,739,062 - 41,740,123 (-)Ensemblpanpan1.1panPan2
A4GALT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,692,121 - 42,721,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,692,121 - 42,721,298 (-)EnsemblGRCh38hg38GRCh38
GRCh372243,088,127 - 43,117,307 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,418,071 - 41,446,820 (-)NCBINCBI36Build 36hg18NCBI36
Build 342241,412,625 - 41,441,374NCBI
Celera2226,998,618 - 27,027,359 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2226,048,070 - 26,051,580 (-)NCBIHuRef
CHM1_12243,047,257 - 43,076,033 (-)NCBICHM1_1
T2T-CHM13v2.02243,172,985 - 43,202,215 (-)NCBIT2T-CHM13v2.0
A4galt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,110,923 - 83,135,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,110,923 - 83,135,975 (-)EnsemblGRCm39 Ensembl
GRCm381583,226,722 - 83,251,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,226,722 - 83,251,774 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,057,152 - 83,082,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,054,488 - 83,079,493 (-)NCBIMGSCv36mm8
Celera1585,360,106 - 85,385,844 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.4NCBI
A4galt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87116,248,571 - 116,272,917 (-)NCBIGRCr8
mRatBN7.27114,368,525 - 114,392,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7114,368,276 - 114,396,071 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7116,123,709 - 116,127,249 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07118,348,074 - 118,351,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07118,317,522 - 118,321,067 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07124,085,832 - 124,110,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7124,085,834 - 124,089,385 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07124,066,829 - 124,099,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47121,252,117 - 121,255,671 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17121,286,348 - 121,289,901 (-)NCBI
Celera7110,683,103 - 110,686,657 (-)NCBICelera
Cytogenetic Map7q34NCBI
A4galt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,018,451 - 28,019,509 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,018,363 - 28,038,359 (-)NCBIChiLan1.0ChiLan1.0
A4GALT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11022,752,657 - 22,776,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1022,774,834 - 22,776,069 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1022,688,321 - 22,712,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01023,497,555 - 23,521,731 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1023,497,585 - 23,521,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,215,584 - 23,239,746 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01023,535,205 - 23,559,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01023,710,196 - 23,734,392 (+)NCBIUU_Cfam_GSD_1.0
A4galt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,349,169 - 6,372,557 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936718594,462 - 630,926 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
A4GALT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,083,444 - 6,105,924 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,083,793 - 6,105,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.253,541,482 - 3,562,498 (+)NCBISscrofa10.2Sscrofa10.2susScr3
A4GALT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11925,247,930 - 25,278,549 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1925,248,687 - 25,249,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045100,193,447 - 100,221,544 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
A4galt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,144,720 - 6,145,781 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247526,127,296 - 6,150,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024927157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034948583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000008193   ⟹   ENSPPAP00000001669
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2241,739,062 - 41,740,123 (-)Ensembl
RefSeq Acc Id: XM_034948576   ⟹   XP_034804467
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,862 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,343 (-)NCBI
Mhudiblu_PPA_v02223,587,378 - 23,615,027 (-)NCBI
RefSeq Acc Id: XM_034948578   ⟹   XP_034804469
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,862 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,343 (-)NCBI
Mhudiblu_PPA_v02223,587,378 - 23,615,040 (-)NCBI
RefSeq Acc Id: XM_034948579   ⟹   XP_034804470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,555,260 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,767 (-)NCBI
Mhudiblu_PPA_v02223,587,378 - 23,615,467 (-)NCBI
RefSeq Acc Id: XM_034948582   ⟹   XP_034804473
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,844 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,343 (-)NCBI
Mhudiblu_PPA_v02223,587,378 - 23,615,023 (-)NCBI
RefSeq Acc Id: XM_034948583   ⟹   XP_034804474
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,555,243 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,757 (-)NCBI
Mhudiblu_PPA_v02223,587,378 - 23,615,456 (-)NCBI
RefSeq Acc Id: XM_055105410   ⟹   XP_054961385
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,752 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,053 (-)NCBI
RefSeq Acc Id: XM_055105411   ⟹   XP_054961386
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,852 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,343 (-)NCBI
RefSeq Acc Id: XM_055105413   ⟹   XP_054961388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,601 (-)NCBI
NHGRI_mPanPan12255,219,627 - 55,247,055 (-)NCBI
RefSeq Acc Id: XM_063603348   ⟹   XP_063459418
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,852 (-)NCBI
RefSeq Acc Id: XM_063603349   ⟹   XP_063459419
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,555,254 (-)NCBI
RefSeq Acc Id: XM_063603350   ⟹   XP_063459420
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,751 (-)NCBI
RefSeq Acc Id: XM_063603351   ⟹   XP_063459421
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,554,533 (-)NCBI
RefSeq Acc Id: XM_063603352   ⟹   XP_063459422
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,527,174 - 52,555,254 (-)NCBI
RefSeq Acc Id: XP_034804470   ⟸   XM_034948579
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804474   ⟸   XM_034948583
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804469   ⟸   XM_034948578
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804467   ⟸   XM_034948576
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804473   ⟸   XM_034948582
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000001669   ⟸   ENSPPAT00000008193
RefSeq Acc Id: XP_054961386   ⟸   XM_055105411
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054961388   ⟸   XM_055105413
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054961385   ⟸   XM_055105410
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459422   ⟸   XM_063603352
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459419   ⟸   XM_063603349
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459418   ⟸   XM_063603348
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459420   ⟸   XM_063603350
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459421   ⟸   XM_063603351
- UniProtKB: A0A2R8Z9K1 (UniProtKB/TrEMBL)
Protein Domains
Alpha 1,4-glycosyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000007549 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000008193.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.20 UniProtKB/TrEMBL
InterPro A1-4-GlycosylTfrase_dom UniProtKB/TrEMBL
  Glycosyltransf_32 UniProtKB/TrEMBL
  GlycoTrfase_DXD_sugar-bd_CS UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene A4GALT ENTREZGENE
PANTHER LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE UniProtKB/TrEMBL
  LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE UniProtKB/TrEMBL
Pfam Gb3_synth UniProtKB/TrEMBL
  Gly_transf_sug UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A2R8Z9K1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-15 A4GALT  alpha 1,4-galactosyltransferase (P1PK blood group)  A4GALT  alpha 1,4-galactosyltransferase (P blood group)  Symbol and/or name change 5135510 APPROVED
2017-03-21 A4GALT  alpha 1,4-galactosyltransferase (P blood group)    alpha 1,4-galactosyltransferase  Symbol and/or name change 5135510 APPROVED