MAK16 (MAK16 homolog) - Rat Genome Database

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Gene: MAK16 (MAK16 homolog) Pan paniscus
Analyze
Symbol: MAK16
Name: MAK16 homolog
RGD ID: 11881062
Description: INVOLVED IN maturation of 5.8S rRNA (inferred); maturation of LSU-rRNA (inferred); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 39 (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein MAK16 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2752,058,530 - 52,076,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1827,775,158 - 27,791,799 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0832,799,512 - 32,816,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1829,986,247 - 30,002,800 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl829,986,247 - 30,002,800 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAK16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2752,058,530 - 52,076,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1827,775,158 - 27,791,799 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0832,799,512 - 32,816,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1829,986,247 - 30,002,800 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl829,986,247 - 30,002,800 (+)Ensemblpanpan1.1panPan2
MAK16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38833,485,182 - 33,501,262 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl833,485,182 - 33,501,262 (+)EnsemblGRCh38hg38GRCh38
GRCh37833,342,700 - 33,358,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36833,462,259 - 33,478,318 (+)NCBINCBI36Build 36hg18NCBI36
Build 34833,462,258 - 33,478,317NCBI
Celera832,292,407 - 32,308,483 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef831,874,776 - 31,890,832 (+)NCBIHuRef
CHM1_1833,544,126 - 33,560,219 (+)NCBICHM1_1
T2T-CHM13v2.0833,756,558 - 33,772,601 (+)NCBIT2T-CHM13v2.0
Mak16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39831,649,496 - 31,658,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl831,649,491 - 31,658,792 (-)EnsemblGRCm39 Ensembl
GRCm38831,159,468 - 31,168,724 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl831,159,463 - 31,168,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv37832,269,940 - 32,279,196 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36832,625,403 - 32,634,659 (-)NCBIMGSCv36mm8
Celera832,684,551 - 32,693,802 (-)NCBICelera
Cytogenetic Map8A3NCBI
cM Map818.05NCBI
Mak16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81667,675,757 - 67,684,188 (+)NCBIGRCr8
mRatBN7.21660,972,699 - 60,981,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1660,972,697 - 60,983,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1666,288,170 - 66,296,605 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01669,702,676 - 69,711,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01664,929,081 - 64,937,562 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01664,729,254 - 64,737,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1664,729,221 - 64,737,807 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01664,386,704 - 64,395,257 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41664,880,166 - 64,888,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11664,880,240 - 64,888,670 (+)NCBI
Celera1658,977,441 - 58,985,872 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
Mak16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554639,642,611 - 9,655,592 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554639,642,627 - 9,651,962 (+)NCBIChiLan1.0ChiLan1.0
MAK16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,167,001 - 31,180,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1631,167,582 - 31,187,055 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1631,692,438 - 31,704,969 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01633,194,449 - 33,207,397 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1633,194,449 - 33,214,117 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11631,290,616 - 31,303,347 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01631,869,723 - 31,882,498 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01631,908,509 - 31,921,295 (-)NCBIUU_Cfam_GSD_1.0
Mak16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,163,877 - 54,171,792 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936766420,330 - 432,244 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936766424,262 - 432,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAK16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21559,544,343 - 59,554,044 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAK16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1831,573,167 - 31,584,377 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605210,468,648 - 10,482,864 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mak16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478010,438,813 - 10,447,957 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478010,436,655 - 10,447,988 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000046736   ⟹   ENSPPAP00000023911
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl829,986,247 - 30,002,800 (+)Ensembl
RefSeq Acc Id: XM_003830749   ⟹   XP_003830797
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2752,058,530 - 52,076,067 (+)NCBI
NHGRI_mPanPan1827,775,158 - 27,791,799 (+)NCBI
Mhudiblu_PPA_v0832,799,512 - 32,816,149 (+)NCBI
PanPan1.1829,986,247 - 30,002,800 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830797 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023911
  ENSPPAP00000023911.1
Reference Protein Sequences
RefSeq Acc Id: XP_003830797   ⟸   XM_003830749
- UniProtKB: A0A2R9B4H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000023911   ⟸   ENSPPAT00000046736
Protein Domains
Ribosomal eL28/Mak16


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035102 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046736.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.390.110 UniProtKB/TrEMBL
InterPro L28e/Mak16 UniProtKB/TrEMBL
  Mak16 UniProtKB/TrEMBL
KEGG Report pps:100971211 UniProtKB/TrEMBL
NCBI Gene MAK16 ENTREZGENE
PANTHER MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED UniProtKB/TrEMBL
  PROTEIN MAK16 HOMOLOG UniProtKB/TrEMBL
Pfam Mak16 UniProtKB/TrEMBL
  Ribosomal_L28e UniProtKB/TrEMBL
PIRSF MAK16 UniProtKB/TrEMBL
UniProt A0A2R9B4H0 ENTREZGENE, UniProtKB/TrEMBL