KRT20 (keratin 20) - Rat Genome Database

Name: KRT20
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: KRT20 (keratin 20) Pan paniscus

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Symbol:

KRT20

Name:

keratin 20

RGD ID:

11872342

Description:

ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN cellular response to starvation (inferred); epithelial cell differentiation (inferred); intermediate filament organization (inferred); ASSOCIATED WITH adenocarcinoma (ortholog); Cecal Neoplasms (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

keratin, type I cytoskeletal 20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KRT20 (keratin 20)	NCBI	Ortholog
Mus musculus (house mouse):	Krt20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Krt20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KRT20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Krt20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KRT20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KRT20 (keratin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	24,058,379 - 24,076,505 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	25,952,345 - 25,966,963 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	16,396,544 - 16,408,104 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	16,624,068 - 16,633,359 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	16,624,068 - 16,633,359 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenocarcinoma (ISO)

Cecal Neoplasms (ISO)

colorectal cancer (ISO)

Neoplasm Metastasis (ISO)

Stomach Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to starvation (IEA)

epithelial cell differentiation (IEA)

intermediate filament organization (IEA)

regulation of protein secretion (IEA)

Cellular Component

cytoplasm (IEA)

cytoskeleton (IEA)

cytosol (IEA)

intermediate filament (IEA)

intermediate filament cytoskeleton (IEA)

Molecular Function

protein binding (ISO)

structural molecule activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

KRT20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	24,058,379 - 24,076,505 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	25,952,345 - 25,966,963 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	16,396,544 - 16,408,104 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	16,624,068 - 16,633,359 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	16,624,068 - 16,633,359 (+)	Ensembl	panpan1.1		panPan2

KRT20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	40,875,889 - 40,885,242 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	40,875,889 - 40,885,242 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	39,032,141 - 39,041,494 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	36,285,719 - 36,295,005 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	36,285,720 - 36,295,005	NCBI
Celera	17	35,693,699 - 35,703,063 (-)	NCBI		Celera
Cytogenetic Map	17	q21.2	NCBI
HuRef	17	34,826,490 - 34,835,854 (-)	NCBI		HuRef
CHM1_1	17	39,267,481 - 39,276,839 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	41,740,198 - 41,749,557 (-)	NCBI		T2T-CHM13v2.0

Krt20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	99,319,211 - 99,328,979 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	99,319,229 - 99,328,976 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	99,428,385 - 99,438,153 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	99,428,403 - 99,438,150 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	99,289,717 - 99,299,467 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	99,244,493 - 99,254,243 (-)	NCBI		MGSCv36	mm8
Celera	11	111,666,995 - 111,676,761 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	62.92	NCBI

Krt20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	84,880,952 - 84,890,285 (-)	NCBI		GRCr8
mRatBN7.2	10	84,384,790 - 84,394,125 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	84,384,802 - 84,394,107 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	89,328,471 - 89,337,664 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	88,826,600 - 88,835,793 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	84,218,570 - 84,227,763 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	87,342,514 - 87,351,045 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	87,342,619 - 87,351,045 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	87,138,402 - 87,147,209 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	88,335,894 - 88,379,899 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	88,350,263 - 88,394,269 (-)	NCBI
Celera	10	83,123,857 - 83,133,118 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

KRT20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	21,808,171 - 21,818,301 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	21,808,548 - 21,817,387 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	21,281,126 - 21,291,858 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	22,601,128 - 22,611,856 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	22,600,545 - 22,610,038 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	21,375,627 - 21,386,343 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	21,634,361 - 21,645,081 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	21,758,632 - 21,769,369 (+)	NCBI		UU_Cfam_GSD_1.0

Krt20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	21,222,795 - 21,236,094 (+)	NCBI		HiC_Itri_2

KRT20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	21,584,814 - 21,594,854 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	21,584,683 - 21,593,583 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	21,893,158 - 21,902,697 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KRT20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	65,296,604 - 65,307,912 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	65,298,642 - 65,311,645 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	36,177,237 - 36,186,695 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003831408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000039130 ⟹ ENSPPAP00000016434

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	16,624,068 - 16,633,359 (+)	Ensembl

RefSeq Acc Id:

XM_003831408 ⟹ XP_003831456

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	24,058,379 - 24,076,505 (+)	NCBI
NHGRI_mPanPan1	17	25,952,345 - 25,966,963 (+)	NCBI
Mhudiblu_PPA_v0	17	16,396,544 - 16,408,104 (+)	NCBI
PanPan1.1	17	16,624,068 - 16,633,359 (+)	NCBI

Sequence:

show sequence

GAGACACACTCTGCCCCAACCATCCTGAAGCTACAGGTGCTCCCTCCTGGAATCTCCAATGGAT
TTCAGTCGCAGAAGCTTCCACAGAAGCCTGAGCTCCTCCTTGCAGGCCCCTGTAGTTAGTACAG
TGGGCATGCAGCGCCTCGGGACGACACCCAGCGTTTATGGGGGTGCTGGAGGCCGAGGCATCCG
CATATCCAACTCCAGACACACGGTGAACTATGGGAGCGATCTCACAGGCGGCGGGGACCTGTTT
GTTGGCAATGAGAAAATGGCCATGCAGAACCTAAATGACCGTCTAGCGAGCTACCTAGAAAAGG
TGCGGACCCTGGAGCAGTCCAACTCCAAACTTGAAGTGCAGATCAAGCAGTGGTACGAAACCAA
CGCCCCGAGGGCTGGTCGCGACTACAGTGCATATTACAGACAAATTGAAGAGCTGCGAAATCAG
ATTAAGGATGCTCAACTGCAAAATGCTCGGTGTGTCCTGCAAATTGATAATGCTAAACTGGCTG
CTGAGGACTTCAGACTGAAGTATGAGACTGAGAGAGGAATACGTCTAACAGTGGAAGCTGATCT
CCAAGGCCTGAATAAGGTCTTTGATGACCTAACCCTACATAAAACAGATTTGGAGATTCAAATT
GAAGAACTGAATAAAGACCTAGCTCTCCTCAAAAAGGAGCATCAGGAGGAAGTCGATGGCCTAC
ACAAGCATCTGGGCAACACTGTCAATGTGGAGGTTGATGCTGCTCCAGGCCTGAACCTTGGCGC
CATCATGAATGAAATGAGGCAGAAGTATGAAGTCATGGCCCAGAAGAACCTTCAAGAGGCCAAA
GAACAGTTTGAGAGACAGACTGCAGTTCTGCAGCAACAGGTCACAGTGAATACTGAAGAATTAA
AAGGAACTGAGGTTCAACTAACGGAGCTGAGACGCACTTCCCAGAGCCTTGAGATAGAACTCCA
GTCCCATCTCAGCATGAAAGAGTCTCTGGAGCACACTCTAGAGGAGACCAAGGCCCGTTACAGC
AGCCAGTTAGCCAACCTCCAGTCACTGTTGAGCTCTCTGGAGGCCCAACTGATGCAGATTCGGA
GTGACATGGAACGCCAGAACAACGAATACCATATCCTTCTTGACATAAAGACTCGGCTTGAACA
GGAAATTGCTACTTACCGCCGCCTTCTGGAAGGAGAAGACGTAAAAACTACAGAATATCAGTTA
AGCACCCTGGAAGAGAGAGATATAAAGAAAACCAGGAAGATTAAGACAGTCGTGCAAGAAGTAG
TGGATGGCAAGGTCGTGTCATCTGAAGTCAAAGAGGTGGAAGAAAATATCTAAATAGCTACCAG
AAGGAGATGCTGCTGAGGTTTCTAAAGAAATTTGGCTATAATCTTATCTTTGCTCCCTGCAAGA
AATCGGCCATAAGAAAGCACTATTAATACTTTGCAGTGATTAGAAGGGGTGGGGTGGCGGGAAT
CCTATTTATCAGACTCTGTAATTGAATATAAATGTTTTACTCAGAGGAGCTGCAAATTGCCTGC
AAAAATGAAATCCAATGAGCACTAGAATATTTAAAACATCATTACTGCCATCTTTATCATGAAG
CACATCAATTACAAGCTGTAGACCACCTAATATCGATTTGTAGGTAATGTTCCTGAAAATTGCA
ATACATTTCAATTATACTAAACCTCACAAAGTAGAGGAATCCATGTAAATTGCAAATAAACCAC
TTTCTAATTTTTTCCTGTTTCTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003831456	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000016434.1

RefSeq Acc Id:

XP_003831456 ⟸ XM_003831408

- UniProtKB:

A0A2R9AN97 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDFSRRSFHRSLSSSLQAPVVSTVGMQRLGTTPSVYGGAGGRGIRISNSRHTVNYGSDLTGGGD
LFVGNEKMAMQNLNDRLASYLEKVRTLEQSNSKLEVQIKQWYETNAPRAGRDYSAYYRQIEELR
NQIKDAQLQNARCVLQIDNAKLAAEDFRLKYETERGIRLTVEADLQGLNKVFDDLTLHKTDLEI
QIEELNKDLALLKKEHQEEVDGLHKHLGNTVNVEVDAAPGLNLGAIMNEMRQKYEVMAQKNLQE
AKEQFERQTAVLQQQVTVNTEELKGTEVQLTELRRTSQSLEIELQSHLSMKESLEHTLEETKAR
YSSQLANLQSLLSSLEAQLMQIRSDMERQNNEYHILLDIKTRLEQEIATYRRLLEGEDVKTTEY
QLSTLEERDIKKTRKIKTVVQEVVDGKVVSSEVKEVEENI

hide sequence

Ensembl Acc Id:

ENSPPAP00000016434 ⟸ ENSPPAT00000039130

Protein Domains

IF rod

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031348	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000039130.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/TrEMBL
	Single helix bin	UniProtKB/TrEMBL
	Vasodilator-stimulated phosphoprotein	UniProtKB/TrEMBL
InterPro	IF_conserved	UniProtKB/TrEMBL
	IF_rod_dom	UniProtKB/TrEMBL
	Keratin_I	UniProtKB/TrEMBL
KEGG Report	pps:100991827	UniProtKB/TrEMBL
NCBI Gene	KRT20	ENTREZGENE
PANTHER	KERATIN, TYPE I CYTOSKELETAL 20	UniProtKB/TrEMBL
	PTHR23239	UniProtKB/TrEMBL
Pfam	Filament	UniProtKB/TrEMBL
PRINTS	TYPE1KERATIN	UniProtKB/TrEMBL
PROSITE	IF_ROD_1	UniProtKB/TrEMBL
	IF_ROD_2	UniProtKB/TrEMBL
SMART	Filament	UniProtKB/TrEMBL
Superfamily-SCOP	Intermediate filament protein, coiled coil region	UniProtKB/TrEMBL
UniProt	A0A2R9AN97	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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