GGNBP2 (gametogenetin binding protein 2) - Rat Genome Database

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Gene: GGNBP2 (gametogenetin binding protein 2) Pan paniscus
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Symbol: GGNBP2
Name: gametogenetin binding protein 2
RGD ID: 11862313
Description: INVOLVED IN cell differentiation (ortholog); labyrinthine layer blood vessel development (ortholog); labyrinthine layer development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gametogenetin-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,170,683 - 28,216,241 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,052,553 - 30,098,084 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,491,687 - 20,537,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11720,786,936 - 20,831,761 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1720,786,936 - 20,831,055 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GGNBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,170,683 - 28,216,241 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,052,553 - 30,098,084 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,491,687 - 20,537,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11720,786,936 - 20,831,761 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1720,786,936 - 20,831,055 (-)Ensemblpanpan1.1panPan2
GGNBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,544,919 - 36,589,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,544,912 - 36,589,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371734,900,768 - 34,946,278 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,974,917 - 32,020,391 (+)NCBINCBI36Build 36hg18NCBI36
Celera1731,723,010 - 31,768,554 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,837,504 - 30,883,611 (+)NCBIHuRef
CHM1_11734,936,451 - 34,981,411 (+)NCBICHM1_1
T2T-CHM13v2.01737,530,672 - 37,576,192 (+)NCBIT2T-CHM13v2.0
Ggnbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,723,187 - 84,761,668 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,723,187 - 84,761,643 (-)EnsemblGRCm39 Ensembl
GRCm381184,832,361 - 84,870,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,832,361 - 84,870,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,645,863 - 84,684,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,648,924 - 84,686,933 (-)NCBIMGSCv36mm8
Celera1194,452,264 - 94,490,756 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.34NCBI
Ggnbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81070,208,950 - 70,240,554 (-)NCBIGRCr8
mRatBN7.21069,711,527 - 69,743,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1069,711,532 - 69,743,365 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1074,331,528 - 74,362,862 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,836,295 - 73,867,629 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01069,300,962 - 69,332,296 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01072,156,729 - 72,188,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1072,156,728 - 72,188,308 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01072,063,588 - 72,095,410 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41073,114,838 - 73,146,171 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11073,129,208 - 73,160,541 (-)NCBI
Celera1068,639,481 - 68,670,565 (-)NCBICelera
Cytogenetic Map10q26NCBI
Ggnbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554511,345,626 - 1,386,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554511,345,720 - 1,386,100 (-)NCBIChiLan1.0ChiLan1.0
GGNBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1936,430,194 - 36,463,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl936,442,652 - 36,463,200 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha935,656,210 - 35,689,394 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,239,385 - 37,273,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,240,094 - 37,273,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,021,874 - 36,055,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0936,308,821 - 36,342,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0936,397,065 - 36,430,249 (+)NCBIUU_Cfam_GSD_1.0
Ggnbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560235,403,096 - 35,439,392 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,635,443 - 1,671,089 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,635,443 - 1,671,057 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGNBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,074,094 - 38,111,710 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,074,033 - 38,111,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21239,695,001 - 39,730,210 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GGNBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11631,200,734 - 31,261,040 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1631,200,740 - 31,260,305 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660771,950,206 - 2,000,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ggnbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248713,624,106 - 3,661,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248713,624,107 - 3,661,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000012695   ⟹   ENSPPAP00000002678
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1720,786,936 - 20,831,055 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000012729   ⟹   ENSPPAP00000002682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1720,827,161 - 20,830,997 (-)Ensembl
RefSeq Acc Id: XM_034942049   ⟹   XP_034797940
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,170,683 - 28,216,241 (-)NCBI
NHGRI_mPanPan11730,052,553 - 30,098,084 (-)NCBI
Mhudiblu_PPA_v01720,491,687 - 20,537,145 (-)NCBI
RefSeq Acc Id: XM_034942050   ⟹   XP_034797941
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,170,683 - 28,216,194 (-)NCBI
NHGRI_mPanPan11730,052,553 - 30,098,019 (-)NCBI
Mhudiblu_PPA_v01720,491,687 - 20,537,133 (-)NCBI
RefSeq Acc Id: XM_034942051   ⟹   XP_034797942
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,170,683 - 28,216,241 (-)NCBI
NHGRI_mPanPan11730,052,553 - 30,098,084 (-)NCBI
Mhudiblu_PPA_v01720,491,687 - 20,537,145 (-)NCBI
RefSeq Acc Id: XM_055102040   ⟹   XP_054958015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,170,683 - 28,216,187 (-)NCBI
NHGRI_mPanPan11730,052,553 - 30,098,019 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034797940 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797941 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797942 (Get FASTA)   NCBI Sequence Viewer  
  XP_054958015 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002678.1
  ENSPPAP00000002682.1
RefSeq Acc Id: XP_034797942   ⟸   XM_034942051
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034797940   ⟸   XM_034942049
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZG84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797941   ⟸   XM_034942050
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZG84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000002682   ⟸   ENSPPAT00000012729
Ensembl Acc Id: ENSPPAP00000002678   ⟸   ENSPPAT00000012695
RefSeq Acc Id: XP_054958015   ⟸   XM_055102040
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000012695.1 UniProtKB/TrEMBL
  ENSPPAT00000012729.1 UniProtKB/TrEMBL
InterPro GGNBP2 UniProtKB/TrEMBL
KEGG Report pps:100989359 UniProtKB/TrEMBL
NCBI Gene GGNBP2 ENTREZGENE
PANTHER GAMETOGENETIN-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR13601 UniProtKB/TrEMBL
UniProt A0A2R8ZCS1_PANPA UniProtKB/TrEMBL
  A0A2R8ZG84 ENTREZGENE, UniProtKB/TrEMBL