FCHSD1 (FCH and double SH3 domains 1) - Rat Genome Database

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Gene: FCHSD1 (FCH and double SH3 domains 1) Pan paniscus
Analyze
Symbol: FCHSD1
Name: FCH and double SH3 domains 1
RGD ID: 11859233
Description: INVOLVED IN apoptotic process (ortholog); gene expression (ortholog); import into nucleus (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cuticular plate (ortholog); cytosol (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-BAR and double SH3 domains protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,027,678 - 135,039,930 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,000,158 - 137,012,379 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,114,440 - 143,125,017 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FCHSD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,027,678 - 135,039,930 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,000,158 - 137,012,379 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,114,440 - 143,125,017 (-)NCBIpanpan1.1PanPan1.1panPan2
FCHSD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,639,302 - 141,651,418 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,639,302 - 141,651,418 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,018,869 - 141,030,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,999,053 - 141,011,170 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,999,052 - 141,011,170NCBI
Celera5137,095,597 - 137,107,714 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,163,376 - 136,175,493 (-)NCBIHuRef
CHM1_15140,452,150 - 140,464,275 (-)NCBICHM1_1
T2T-CHM13v2.05142,165,308 - 142,177,433 (-)NCBIT2T-CHM13v2.0
Fchsd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,090,484 - 38,102,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,090,484 - 38,102,827 (-)EnsemblGRCm39 Ensembl
GRCm381837,957,431 - 37,969,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,957,431 - 37,969,774 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,117,088 - 38,129,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,083,408 - 38,095,705 (-)NCBIMGSCv36mm8
Celera1839,300,818 - 39,313,113 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.84NCBI
Fchsd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,043,466 - 30,056,326 (-)NCBIGRCr8
mRatBN7.21829,793,899 - 29,804,533 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,793,899 - 29,804,466 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,898,204 - 29,908,771 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,660,402 - 30,670,962 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,995,747 - 30,006,307 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,096,815 - 31,109,077 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,095,613 - 31,109,025 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,784,855 - 30,797,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,878,455 - 30,890,675 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,907,252 - 30,917,329 (-)NCBI
Celera1829,436,850 - 29,449,069 (-)NCBICelera
Cytogenetic Map18p11NCBI
Fchsd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,123,520 - 12,135,412 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,123,520 - 12,135,412 (+)NCBIChiLan1.0ChiLan1.0
FCHSD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,601,969 - 36,612,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,602,460 - 36,612,199 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,653,988 - 33,664,163 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,056,295 - 37,066,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,054,524 - 37,066,405 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,130,792 - 34,141,033 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,942,324 - 34,952,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,749,609 - 35,759,851 (-)NCBIUU_Cfam_GSD_1.0
Fchsd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,942,207 - 150,953,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,516,226 - 12,526,306 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,516,226 - 12,526,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCHSD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,289,859 - 143,301,900 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,289,854 - 143,301,921 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,494,223 - 149,504,542 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCHSD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,267,276 - 44,277,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,267,798 - 44,277,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,574,881 - 33,587,047 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fchsd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774867,895 - 879,518 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774867,864 - 880,929 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_008954529   ⟹   XP_008952777
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBI
NHGRI_mPanPan15135,029,593 - 135,039,930 (-)NCBI
Mhudiblu_PPA_v05137,001,838 - 137,012,376 (-)NCBI
PanPan1.15143,114,440 - 143,124,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034960665   ⟹   XP_034816556
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBI
NHGRI_mPanPan15135,027,678 - 135,039,930 (-)NCBI
Mhudiblu_PPA_v05137,000,158 - 137,012,377 (-)NCBI
RefSeq Acc Id: XM_055112729   ⟹   XP_054968704
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,891,225 - 136,902,229 (-)NCBI
NHGRI_mPanPan15135,030,776 - 135,039,930 (-)NCBI
RefSeq Acc Id: XM_063604642   ⟹   XP_063460712
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBI
RefSeq Acc Id: XM_063604643   ⟹   XP_063460713
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,889,807 - 136,902,229 (-)NCBI
RefSeq Acc Id: XM_063604644   ⟹   XP_063460714
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,891,225 - 136,902,229 (-)NCBI
RefSeq Acc Id: XM_063604645   ⟹   XP_063460715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24136,890,319 - 136,902,229 (-)NCBI
RefSeq Acc Id: XP_008952777   ⟸   XM_008954529
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034816556   ⟸   XM_034960665
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054968704   ⟸   XM_055112729
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063460713   ⟸   XM_063604643
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460712   ⟸   XM_063604642
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063460715   ⟸   XM_063604645
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063460714   ⟸   XM_063604644
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
NCBI Gene FCHSD1 ENTREZGENE