ZNF287 (zinc finger protein 287) - Rat Genome Database

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Gene: ZNF287 (zinc finger protein 287) Pan paniscus
Analyze
Symbol: ZNF287
Name: zinc finger protein 287
RGD ID: 11852280
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of cytokine production (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,055,015 - 56,074,926 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11760,866,640 - 60,887,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,464,681 - 35,485,619 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,753,063 - 110,776,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,756,432 - 110,776,732 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF287
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,055,015 - 56,074,926 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11760,866,640 - 60,887,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,464,681 - 35,485,619 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,753,063 - 110,776,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,756,432 - 110,776,732 (-)Ensemblpanpan1.1panPan2
ZNF287
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,546,954 - 16,569,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,546,954 - 16,569,204 (-)EnsemblGRCh38hg38GRCh38
GRCh371716,450,268 - 16,472,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,395,426 - 16,413,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 341716,395,434 - 16,413,189NCBI
Celera1716,356,542 - 16,375,435 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,320,449 - 16,339,388 (-)NCBIHuRef
CHM1_11716,463,221 - 16,482,114 (-)NCBICHM1_1
T2T-CHM13v2.01716,449,237 - 16,471,499 (-)NCBIT2T-CHM13v2.0
Zfp287
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,583,270 - 62,622,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,591,182 - 62,622,731 (-)EnsemblGRCm39 Ensembl
GRCm381162,692,444 - 62,731,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,700,356 - 62,731,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,524,988 - 62,542,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,529,482 - 62,545,288 (-)NCBIMGSCv36mm8
Celera1169,631,800 - 69,649,417 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.62NCBI
Zfp287
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,896,517 - 47,914,860 (-)NCBIGRCr8
mRatBN7.21047,395,650 - 47,415,610 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,397,285 - 47,439,755 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1052,100,517 - 52,117,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,591,065 - 51,607,989 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01047,094,485 - 47,111,406 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01049,131,764 - 49,150,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1049,135,277 - 49,149,479 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,913,568 - 48,956,344 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,896,296 - 48,913,856 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,912,968 - 48,927,504 (-)NCBI
Celera1046,642,693 - 46,659,522 (-)NCBICelera
Cytogenetic Map10q23NCBI
Znf287
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,880,859 - 1,896,251 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,878,543 - 1,897,735 (-)NCBIChiLan1.0ChiLan1.0
ZNF287
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,384,803 - 39,405,850 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,385,442 - 39,402,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,529,431 - 39,550,480 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,493,132 - 39,514,188 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,493,142 - 39,514,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,464,907 - 39,485,934 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,410,431 - 39,431,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,602,257 - 39,623,303 (+)NCBIUU_Cfam_GSD_1.0
Znf287
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,700,608 - 59,719,200 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682194,524 - 109,341 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493682193,014 - 111,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF287
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,038,774 - 59,053,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,038,737 - 59,056,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,165,579 - 62,177,611 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF287
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,087,895 - 15,107,194 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660595,868,357 - 5,886,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf287
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248773,878,910 - 3,899,394 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_0046248773,830,023 - 3,841,257 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248773,817,976 - 3,902,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000042566   ⟹   ENSPPAP00000019789
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A110,756,432 - 110,776,732 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000042569   ⟹   ENSPPAP00000019792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A110,757,963 - 110,775,674 (-)Ensembl
RefSeq Acc Id: XM_003831166   ⟹   XP_003831214
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,055,137 - 56,074,926 (+)NCBI
NHGRI_mPanPan11760,866,762 - 60,887,340 (+)NCBI
Mhudiblu_PPA_v01735,464,681 - 35,485,613 (-)NCBI
PanPan1.12A110,753,063 - 110,776,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943286   ⟹   XP_034799177
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,055,150 - 56,074,926 (+)NCBI
NHGRI_mPanPan11760,866,775 - 60,887,340 (+)NCBI
Mhudiblu_PPA_v01735,464,681 - 35,485,484 (-)NCBI
RefSeq Acc Id: XM_057300240   ⟹   XP_057156223
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,055,015 - 56,074,926 (+)NCBI
NHGRI_mPanPan11760,866,640 - 60,887,340 (+)NCBI
RefSeq Acc Id: XM_063599223   ⟹   XP_063455293
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21956,055,141 - 56,074,926 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003831214 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799177 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156223 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455293 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019789.1
  ENSPPAP00000019792.1
RefSeq Acc Id: XP_003831214   ⟸   XM_003831166
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034799177   ⟸   XM_034943286
- Peptide Label: isoform X1
Ensembl Acc Id: ENSPPAP00000019789   ⟸   ENSPPAT00000042566
Ensembl Acc Id: ENSPPAP00000019792   ⟸   ENSPPAT00000042569
RefSeq Acc Id: XP_057156223   ⟸   XM_057300240
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063455293   ⟸   XM_063599223
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033114 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042566.1 UniProtKB/TrEMBL
  ENSPPAT00000042569.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100988558 UniProtKB/TrEMBL
NCBI Gene ZNF287 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 46 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9AXM9_PANPA UniProtKB/TrEMBL