LOC100978744 (large ribosomal subunit protein eL30) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100978744 (large ribosomal subunit protein eL30) Pan paniscus
Analyze
Symbol: LOC100978744
Name: large ribosomal subunit protein eL30
RGD ID: 11846162
Description: ENCODES a protein that exhibits RNA binding (inferred); structural constituent of ribosome (inferred); FOUND IN cytosolic large ribosomal subunit (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L30
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,537,233 - 42,538,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,542,815 - 42,543,723 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,480,985 - 42,481,484 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1342,743,863 - 42,744,365 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003826054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003826054   ⟹   XP_003826102
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2242,537,233 - 42,538,961 (+)NCBI
NHGRI_mPanPan1342,542,815 - 42,543,723 (+)NCBI
Mhudiblu_PPA_v0342,480,985 - 42,481,484 (+)NCBI
PanPan1.1342,743,863 - 42,744,365 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003826102 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016222.1
Reference Protein Sequences
RefSeq Acc Id: XP_003826102   ⟸   XM_003826054
- UniProtKB: A0A2R9AFW1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031219 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038916.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30/L30e UniProtKB/TrEMBL
  L30e-like UniProtKB/TrEMBL
  Ribosomal_L30e UniProtKB/TrEMBL
  Ribosomal_L30e_CS UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
NCBI Gene LOC100978744 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L30 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L30 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L30E_1 UniProtKB/TrEMBL
  RIBOSOMAL_L30E_2 UniProtKB/TrEMBL
Superfamily-SCOP L30e-like UniProtKB/TrEMBL
UniProt A0A2R9AFW1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100978744  large ribosomal subunit protein eL30  LOC100978744  60S ribosomal protein L30  Symbol and/or name change 5135510 APPROVED