ANKRD16 (ankyrin repeat domain 16) - Rat Genome Database

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Gene: ANKRD16 (ankyrin repeat domain 16) Pan paniscus
Analyze
Symbol: ANKRD16
Name: ankyrin repeat domain 16
RGD ID: 11825692
Description: INVOLVED IN tRNA modification (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,414,582 - 18,443,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,419,913 - 18,448,840 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,902,950 - 5,931,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,887,294 - 5,915,357 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl105,887,294 - 5,916,076 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ANKRD16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,414,582 - 18,443,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,419,913 - 18,448,840 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,902,950 - 5,931,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,887,294 - 5,915,357 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl105,887,294 - 5,916,076 (-)Ensemblpanpan1.1panPan2
ANKRD16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,861,616 - 5,889,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,861,616 - 5,889,906 (-)EnsemblGRCh38hg38GRCh38
GRCh37105,903,579 - 5,931,856 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36105,943,695 - 5,971,352 (-)NCBINCBI36Build 36hg18NCBI36
Celera105,834,082 - 5,862,252 (-)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,830,571 - 5,858,661 (-)NCBIHuRef
CHM1_1105,903,658 - 5,931,846 (-)NCBICHM1_1
T2T-CHM13v2.0105,862,155 - 5,890,421 (-)NCBIT2T-CHM13v2.0
Ankrd16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39211,781,902 - 11,795,138 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl211,782,687 - 11,795,140 (+)EnsemblGRCm39 Ensembl
GRCm38211,777,753 - 11,790,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl211,777,876 - 11,790,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv37211,699,380 - 11,711,952 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36211,696,430 - 11,699,117 (+)NCBIMGSCv36mm8
Celera211,695,297 - 11,707,870 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map29.05NCBI
Ankrd16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,645,171 - 71,658,377 (-)NCBIGRCr8
mRatBN7.21766,735,325 - 66,748,533 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,737,261 - 66,748,533 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1770,220,672 - 70,233,898 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01774,049,489 - 74,062,715 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01768,092,487 - 68,105,713 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01770,384,883 - 70,398,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,386,707 - 70,398,769 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01772,089,017 - 72,102,223 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,930,658 - 77,943,867 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11777,943,506 - 77,954,647 (-)NCBI
Celera1766,240,588 - 66,253,794 (-)NCBICelera
Cytogenetic Map17q12.2NCBI
Ankrd16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,521,284 - 22,534,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,520,707 - 22,535,618 (-)NCBIChiLan1.0ChiLan1.0
ANKRD16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1230,095,941 - 30,105,739 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl230,095,548 - 30,105,212 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,126,616 - 27,136,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,477,215 - 30,486,820 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl230,476,993 - 30,486,293 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,574,028 - 27,583,629 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,410,328 - 28,419,940 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,128,660 - 29,138,265 (+)NCBIUU_Cfam_GSD_1.0
Ankrd16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,524,952 - 32,535,512 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,690,090 - 8,701,499 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,690,183 - 8,700,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1065,109,086 - 65,122,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11065,109,043 - 65,149,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21071,224,784 - 71,260,761 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.195,969,869 - 5,997,795 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl95,984,250 - 5,997,657 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,272,882 - 11,301,382 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624775772,908 - 787,505 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624775772,192 - 788,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000010771   ⟹   ENSPPAP00000002187
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl105,887,294 - 5,915,357 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000010813   ⟹   ENSPPAP00000002193
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl105,898,814 - 5,915,357 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000010829   ⟹   ENSPPAP00000002198
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl105,903,715 - 5,915,357 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000010925   ⟹   ENSPPAP00000002216
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl105,903,756 - 5,916,076 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000010937   ⟹   ENSPPAP00000002220
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl105,903,756 - 5,915,055 (-)Ensembl
RefSeq Acc Id: XM_014346363   ⟹   XP_014201849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,414,582 - 18,443,526 (-)NCBI
NHGRI_mPanPan11018,419,913 - 18,448,840 (-)NCBI
Mhudiblu_PPA_v0105,902,950 - 5,931,100 (-)NCBI
PanPan1.1105,887,294 - 5,915,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014346364   ⟹   XP_014201850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,425,488 - 18,443,526 (-)NCBI
NHGRI_mPanPan11018,430,811 - 18,448,840 (-)NCBI
Mhudiblu_PPA_v0105,917,261 - 5,931,100 (-)NCBI
PanPan1.1105,901,848 - 5,915,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014346366   ⟹   XP_014201852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,431,146 - 18,443,526 (-)NCBI
NHGRI_mPanPan11018,435,506 - 18,448,840 (-)NCBI
Mhudiblu_PPA_v0105,918,691 - 5,931,100 (-)NCBI
PanPan1.1105,903,715 - 5,915,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034929889   ⟹   XP_034785780
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,414,582 - 18,443,526 (-)NCBI
NHGRI_mPanPan11018,419,913 - 18,448,840 (-)NCBI
Mhudiblu_PPA_v0105,903,288 - 5,931,101 (-)NCBI
RefSeq Acc Id: XM_063607241   ⟹   XP_063463311
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,423,490 - 18,443,526 (-)NCBI
RefSeq Acc Id: XR_004664499
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,414,582 - 18,443,526 (-)NCBI
NHGRI_mPanPan11018,419,913 - 18,448,840 (-)NCBI
Mhudiblu_PPA_v0105,903,288 - 5,931,100 (-)NCBI
RefSeq Acc Id: XR_010113153
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2818,425,488 - 18,443,526 (-)NCBI
RefSeq Acc Id: XP_014201849   ⟸   XM_014346363
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZBH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014201850   ⟸   XM_014346364
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZBH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014201852   ⟸   XM_014346366
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZAY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034785780   ⟸   XM_034929889
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZAY4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000002220   ⟸   ENSPPAT00000010937
Ensembl Acc Id: ENSPPAP00000002216   ⟸   ENSPPAT00000010925
Ensembl Acc Id: ENSPPAP00000002187   ⟸   ENSPPAT00000010771
Ensembl Acc Id: ENSPPAP00000002198   ⟸   ENSPPAT00000010829
Ensembl Acc Id: ENSPPAP00000002193   ⟸   ENSPPAT00000010813
RefSeq Acc Id: XP_063463311   ⟸   XM_063607241
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZBH8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009972 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010771.1 UniProtKB/TrEMBL
  ENSPPAT00000010813.1 UniProtKB/TrEMBL
  ENSPPAT00000010829.1 UniProtKB/TrEMBL
  ENSPPAT00000010925.1 UniProtKB/TrEMBL
  ENSPPAT00000010937.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ank_Repeat/CDKN_Inhibitor UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Multifunctional_ANK_Repeat UniProtKB/TrEMBL
KEGG Report pps:100973719 UniProtKB/TrEMBL
NCBI Gene ANKRD16 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN 2, ISOFORM U UniProtKB/TrEMBL
  ANKYRIN REPEAT FAMILY PROTEIN UniProtKB/TrEMBL
  ANKYRIN REPEAT-CONTAINING UniProtKB/TrEMBL
  DIEGO, ISOFORM A UniProtKB/TrEMBL
  MOLTING PROTEIN MLT-4 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_3 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A2R8ZAX9_PANPA UniProtKB/TrEMBL
  A0A2R8ZAY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZBH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZF07_PANPA UniProtKB/TrEMBL
  A0A2R8ZHM5_PANPA UniProtKB/TrEMBL