LOC100968685 (probable G-protein coupled receptor 141) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100968685 (probable G-protein coupled receptor 141) Pan paniscus
Analyze
Symbol: LOC100968685 (Ensembl: GPR141)
Name: probable G-protein coupled receptor 141 (Ensembl:G protein-coupled receptor 141)
RGD ID: 11802763
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); oxysterol binding (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); primary ciliary dyskinesia 6 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein-coupled receptor 141; GPR141
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2642,507,070 - 42,578,024 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1790,831,805 - 90,902,759 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0738,166,383 - 38,383,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1738,544,896 - 38,604,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl738,601,459 - 38,602,376 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100968685
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2642,507,070 - 42,578,024 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1790,831,805 - 90,902,759 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0738,166,383 - 38,383,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1738,544,896 - 38,604,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl738,601,459 - 38,602,376 (+)Ensemblpanpan1.1panPan2
GPR141
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38737,683,766 - 37,743,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl737,683,766 - 37,833,788 (+)EnsemblGRCh38hg38GRCh38
GRCh37737,723,369 - 37,783,437 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36737,746,521 - 37,747,438 (+)NCBINCBI36Build 36hg18NCBI36
Build 34737,553,235 - 37,554,153NCBI
Celera737,764,438 - 37,765,355 (+)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef737,659,886 - 37,660,803 (+)NCBIHuRef
CHM1_1737,779,577 - 37,780,494 (+)NCBICHM1_1
T2T-CHM13v2.0737,824,251 - 37,884,325 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2737,817,623 - 37,818,540 (+)NCBI
Gpr141
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391319,933,850 - 20,008,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1319,933,852 - 20,008,427 (-)EnsemblGRCm39 Ensembl
GRCm381319,749,680 - 19,824,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1319,749,682 - 19,824,257 (-)EnsemblGRCm38mm10GRCm38
MGSCv371319,841,551 - 19,916,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361319,757,147 - 19,831,722 (-)NCBIMGSCv36mm8
Celera1320,048,554 - 20,122,788 (-)NCBICelera
Cytogenetic Map13A2NCBI
cM Map137.04NCBI
Gpr141
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81749,813,489 - 49,875,721 (+)NCBIGRCr8
mRatBN7.21745,117,818 - 45,180,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1745,117,812 - 45,180,027 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1747,254,272 - 47,276,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01752,013,431 - 52,035,651 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01746,503,827 - 46,526,047 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01747,241,017 - 47,262,345 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1747,241,017 - 47,262,345 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01756,224,579 - 56,245,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11753,000,219 - 53,000,343 (+)NCBI
Celera1751,329,691 - 51,351,900 (-)NCBICelera
Cytogenetic Map17q11NCBI
GPR141
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11448,810,741 - 48,853,936 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1448,852,853 - 48,853,758 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1448,254,752 - 48,297,747 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01448,760,245 - 48,803,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1448,760,282 - 48,805,009 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11448,854,294 - 48,897,301 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01448,538,269 - 48,581,165 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01448,914,725 - 48,957,859 (+)NCBIUU_Cfam_GSD_1.0
Gpr141
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511893,895,086 - 93,898,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647813,106,824 - 13,107,741 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647813,106,824 - 13,107,741 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100521938
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1836,612,285 - 36,613,196 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11836,611,676 - 36,662,600 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21840,251,562 - 40,302,300 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR141
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12120,779,445 - 20,845,890 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2120,779,511 - 20,780,428 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660621,546,810 - 1,566,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000024017   ⟹   ENSPPAP00000005263
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl738,601,459 - 38,602,376 (+)Ensembl
RefSeq Acc Id: XM_034963951   ⟹   XP_034819842
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2642,518,899 - 42,578,024 (+)NCBI
NHGRI_mPanPan1790,843,634 - 90,902,759 (+)NCBI
Mhudiblu_PPA_v0738,369,403 - 38,383,346 (+)NCBI
RefSeq Acc Id: XM_034963952   ⟹   XP_034819843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2642,517,790 - 42,578,024 (+)NCBI
NHGRI_mPanPan1790,842,525 - 90,902,759 (+)NCBI
Mhudiblu_PPA_v0738,323,261 - 38,383,340 (+)NCBI
RefSeq Acc Id: XM_055115856   ⟹   XP_054971831
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2642,507,070 - 42,578,024 (+)NCBI
NHGRI_mPanPan1790,831,805 - 90,902,759 (+)NCBI
RefSeq Acc Id: XM_055115857   ⟹   XP_054971832
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2642,517,790 - 42,578,024 (+)NCBI
NHGRI_mPanPan1790,842,525 - 90,902,759 (+)NCBI
RefSeq Acc Id: XM_055115858   ⟹   XP_054971833
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2642,517,790 - 42,578,024 (+)NCBI
NHGRI_mPanPan1790,842,525 - 90,902,759 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034819842 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819843 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971831 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971832 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971833 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005263.1
Reference Protein Sequences
RefSeq Acc Id: XP_034819843   ⟸   XM_034963952
- UniProtKB: A0A2R8ZJX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819842   ⟸   XM_034963951
- UniProtKB: A0A2R8ZJX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000005263   ⟸   ENSPPAT00000024017
RefSeq Acc Id: XP_054971831   ⟸   XM_055115856
- UniProtKB: A0A2R8ZJX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971832   ⟸   XM_055115857
- UniProtKB: A0A2R8ZJX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971833   ⟸   XM_055115858
- UniProtKB: A0A2R8ZJX0 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000021913 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000024017.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GP183-like UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene GPR141 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 141-RELATED UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZJX0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100968685  probable G-protein coupled receptor 141  GPR141  G protein-coupled receptor 141  Symbol and/or name change 5135510 APPROVED