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Gene: YOD1 (YOD1 deubiquitinase) Pan paniscus

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Symbol:

YOD1 (Ensembl: C1orf116)

Name:

YOD1 deubiquitinase (Ensembl:chromosome 1 open reading frame 116)

RGD ID:

11790370

Description:

ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); K48-linked deubiquitinase activity (inferred); INVOLVED IN endoplasmic reticulum unfolded protein response (inferred); ERAD pathway (inferred); macroautophagy (inferred); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C1H1orf116; chromosome 1 C1orf116 homolog; chromosome 1 open reading frame, human C1orf116; specifically androgen-regulated gene protein-like; ubiquitin thioesterase OTU1; YOD1 OTU deubiquinating enzyme 1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	42,322,726 - 42,356,466 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	42,288,611 - 42,322,433 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	182,621,404 - 182,635,619 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	186,899,721 - 186,913,937 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	186,930,209 - 186,932,225 (-)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	1	186,899,721 - 186,913,981 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

common variable immunodeficiency 7 (ISO)

gastrointestinal stromal tumor (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

inflammatory bowel disease (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum unfolded protein response (IEA)

ERAD pathway (IEA)

macroautophagy (IEA)

negative regulation of retrograde protein transport, ER to cytosol (IEA)

protein deubiquitination (IEA)

protein K11-linked deubiquitination (IEA)

protein K27-linked deubiquitination (IEA)

protein K29-linked deubiquitination (IEA)

protein K33-linked deubiquitination (IEA)

protein K48-linked deubiquitination (IEA)

protein K63-linked deubiquitination (IEA)

proteolysis (IEA)

response to unfolded protein (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

cysteine-type deubiquitinase activity (IEA)

cysteine-type peptidase activity (IEA)

K48-linked deubiquitinase activity (IEA)

protein binding (ISO)

ubiquitin protein ligase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

YOD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	42,322,726 - 42,356,466 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	42,288,611 - 42,322,433 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	182,621,404 - 182,635,619 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	186,899,721 - 186,913,937 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	186,930,209 - 186,932,225 (-)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	1	186,899,721 - 186,913,981 (-)	Ensembl	panpan1.1		panPan2

YOD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	207,043,849 - 207,053,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	207,043,849 - 207,052,980 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	207,217,194 - 207,226,461 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	205,283,817 - 205,291,045 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	180,468,698 - 180,475,926 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	177,914,550 - 177,923,681 (-)	NCBI		HuRef
CHM1_1	1	208,489,805 - 208,498,936 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	206,309,040 - 206,318,351 (-)	NCBI		T2T-CHM13v2.0

AA986860
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	130,659,707 - 130,672,359 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	130,659,713 - 130,672,359 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	130,731,942 - 130,744,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	130,731,976 - 130,744,622 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	132,628,553 - 132,641,199 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	132,567,818 - 132,572,167 (+)	NCBI		MGSCv36	mm8
Celera	1	133,355,372 - 133,368,001 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	56.89	NCBI

C13h1orf116
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	44,739,716 - 44,753,695 (+)	NCBI		GRCr8
mRatBN7.2	13	42,187,442 - 42,201,432 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	42,188,609 - 42,201,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	44,795,183 - 44,808,006 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	46,083,328 - 46,096,155 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	43,327,995 - 43,340,772 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	47,452,436 - 47,467,432 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	47,454,591 - 47,467,432 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	52,543,246 - 52,556,096 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	43,666,569 - 43,679,410 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	42,539,362 - 42,552,174 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

C7H1orf116
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	6,160,652 - 6,172,699 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	6,161,474 - 6,171,451 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	5,724,061 - 5,736,088 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	5,849,407 - 5,861,475 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	7	5,783,155 - 5,795,208 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	5,884,780 - 5,896,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	5,924,887 - 5,936,953 (-)	NCBI		UU_Cfam_GSD_1.0

C9H1orf116
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	67,648,333 - 67,661,407 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	67,648,333 - 67,661,384 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CUNH1orf116
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	22,326,726 - 22,336,655 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	22,326,530 - 22,336,368 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	22,968,546 - 22,979,640 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf116
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	4,462,447 - 4,474,792 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	4,462,329 - 4,474,382 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003822906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003822907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034945559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055108804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055108806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000000100 ⟹ ENSPPAP00000000052

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	186,899,721 - 186,913,981 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000000103 ⟹ ENSPPAP00000000053

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	186,899,721 - 186,913,981 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000044240 ⟹ ENSPPAP00000021438

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	186,930,209 - 186,932,225 (-)	Ensembl

RefSeq Acc Id:

XM_003822906 ⟹ XP_003822954

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	42,342,244 - 42,356,466 (+)	NCBI
NHGRI_mPanPan1	1	42,308,211 - 42,322,433 (+)	NCBI
Mhudiblu_PPA_v0	1	182,621,404 - 182,635,619 (-)	NCBI
PanPan1.1	1	186,899,721 - 186,913,937 (-)	NCBI

Sequence:

show sequence

AGGGTGGGGGCCAGGCAGCACAGATGAAGCATTTACCTGTCTCGGTAAGTCAGGAGGAGCTCAA
AAGGAGAAGAAAACAGTAGGAGGCAGGGGAAGCAGCCTCTGTCTCCATCTCTGCCCTTTGAAAC
AAAAGGGTATTTCTTTTCTCTCTTCAGCCCCCAACCCAGTGGAGGCCCGGCTTGGGACATTGTT
CACTTCCGCTCGCTTCCCCTCTAGGAGCCCCCTTTGCCATCCCTGTGCCTTGTTTCGGGCGATG
CCCGAGAGGGAGCTGTGGCCAGCGGGGCCTGGCTCAGAACCTGTGACCCGTGTCGGCAGCTGTG
ACAGCATGATGAGCAGCACCTCCACCCGCTCTGGATCTAGTGATAGCAGCTACGACTTCCTGTC
CGCTGAAGAGAAGGAGTGTCTGCTCTTCCTGGAGGAGACCATTGGCTCACTGGACACGGAGGCT
GACAGCGGACTGTCCACTGACGAGTCTGAGCCAGCCACAACTCCCAGAGGTTTCCGAGCACTGC
CCATAACCCAACCCACTCCCCGGGGAGGTCCAGAGGAGACCATCACTCAGCAAGGACGAGCGCC
AAGGACAGTAACTGAGTCCAGCTCATCCCATCCTCCTGAGCCCCAGGGCCTAGGCCTCAGGTCA
GGCTCCTACAGCCTCCCTAGGAATATCCACATTGCCAGAAGCCAGAACTTCAGGAAAAGCACCA
CCCAGGCTAGCAGTCACACCCCTGGAGAACCGGGGAGGCTTGCGCCAGAGCCTGAGAAAGAACA
GGTCAGCCAGAGCAGCCAACCCAGGCAGGCACCTGCCAGCCCCCAGGAGGCTGCCCTTGACTTG
GACGTGGTGCTCATCCCTCCGCCAGAAGCTTTCCGGGACATCCAGCCAGAGCAGTGTAGGGAAG
CCAGCCTGCCTGAGGGGCCAGGACAGCAGGGCCACACACCCCAGCTCCACACACCATCCAGCTC
CCAGGAAAGAGAGCAGACTCCTTCAGAAGCCATGTCCCAAAAAGCCAAGGAAACAGGCTCAACC
GGGTACACACAACAACCCCAGCCTCCTCCTGCAGGGTTGCCTCAGAATGCAAGAGCTGAAGATG
CTCCCCTCCCATCAGGGGAGGACCCAAACAGCCGACTAGCTCCCCTCACAACCCCTAAGCCCCG
GAAGCTGCCACCTAATATTGTTCTGAAGAGCAGCCGAAGCAGTTTCCACAGTGACCCCCAGCAC
TGGCTGTCCCGCCACACTGAGGCTGCCCCTGGAGATTCTGGCCTGATCTCCTGTTCACTGCAAG
AGCAGAGAAAAGCACGTAAAGAAGCTCTAGAGAAGCTGGGGCTACCCCAGGATCAAGATGAGCC
TGGACTCCACTTAAGTAAGCCCACCAGCTCCATCAGACCCAAGGAGACACGGGCCCAGCATCTG
TCCCCAGCTCCAGGTCTGGCTCAGCCTGCAGCTCCAGCCCAGGCCTCAGCAGCTATTCCTGCTG
CTGGGAAGGCTCTGGCTCAAGCTCCGGCTCCAGCTCCAGGTCCAGCTCAGGGACCTTTGCCAAT
GAAGTCTCCAGCTCCAGGCAATGTTGCAGCTAGCAAATCTATGCCAATTCCTATCCCTAAGGCC
CCGAGGGCAAACAGTGCCCTGACTCCACCAAAGCCAGAGTCAGGGCTGACTCTCCAGGAGAGCA
ACACCCCTGGCCTGAGACAGATGAACTTCAAGTCCAACACTCTGGAGCGCTCAGGGGTGGGACT
GAGCAGCTACCTTTCATCTGAGAAAGATGCCAGCCCCAAAACCAGCACTTCTCTGGGAAAGGGC
TCCTTCTTGGACAAGATCTCGCCCAGTGTCTTACGTAATTCTCGGCCCCGCCCGGCCTCCCTGG
GCACGGGGAAAGATTTTGCAGGTATCCAGGTAGGCAAGCTGGCTGACCTGGAGCAGGAGCAGAG
CTCCAAGCACCTGTCCTACCAAGGACAGAGCCGTGACAAGCTTCCTCGGCCCCCCTGTGTCAGT
GTCAAGATCTCCCCAAAGGGTGTCCCCAATGAACACAGAAGGGAGGCCCTGAAGAAGCTGGGAC
TGTTGAAGGAGTAGACTCTGCGACCAGTACAGACCCTGTCCTGGCTGAACAAGAAGAGACACAT
GCTCCACTTGGGAGCCTTTGCCACCACGCAACTCAGGGCTCAAGATGAATGGGAGGGAGAGATT
TGAGTCCAAGCATACATTTATATTCAGTGTTGTGCCATTGAGTTCCCATGTGGATCATTCTGAA
GGTGATCTCCACAAGAGGCTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTGGTGTTGTGT
GAAGGGGGCCGCTGGATACATCACTGAAGCTATTGATATAACACAATGAGTCACTGTTCAGAAT
TCTGCTCTTGTTAGATGTTTTCTTACATTGGGTAGAGTCCAGCCTAGCGAGAGCTGAGTGAAGG
GGCTGGCCATGCCTGAGACGAAAAGTCAAATGAGACAATGGACGTGTCAATGACTTGAAAAAAA
GTTACATCCAGCAAATGCAGGGTCACATGAAATATGGGCCTCCTGGAATCCCTACAGTGGATGG
AGACTGGCTCATACCTTGCCAGATCCCTCTCTCAGTTCCAGCCTTCTGGACAAGGCCTGGGCTA
AGAGGAGCTGATTCGTTATCTCTTCACCCACTGCCCTCTCAGTATCACCAGTCCCAAAGACAGG
ATACGTCCCTGTAACCCAATCTCTCGGTTGATTGATAGCAGAACAGCTCTTGTTGGTCTGAGAA
GGCAGGATAAGTGACCACATATTTATGCCACTACCTCCACCAGGGAGAGTCCTTCTCCACAGGC
TTGATAAATTCAATCACCAACTGTGCTGTGGTCCCTGACTCTGCTACTCCCGTTCTTCCTGCTT
TCCTGCTCCGTATCTCAGTCTGCACTGACCCCAGGGCTGGGCTGACATCAAGATGGGAGCCCAG
CCCACAGGCTTTATAAACACCCAAGAACCGTTTCAGATCTTCTCTGTGCTGATGCAGGTAGTTT
TAAATTTTTCTCAGTTCCAGTGATAGAAAACCCACACAATACATCCTCTGCCAGTCTTAATAGA
ATATCAGAGGTAAGAGGGGCCTCAGAGAAGCTCTGACGCAGTGCTGCTGGGGAAGGGAAGTGAC
TAACCCCGGGTCAGCCTGCCATTTAGGGAAAGAGCTGAGGTTCTTACCCTTGTTGCATGCTGCC
ACCTCTCCTTAGCCAGTGCTCTTGTACATCCACACAGCACCCTAAGGAGCCATAGTCACCATCA
AAGACTCAACCCTAAGGCCCTTCAAGATCTCAAAGTGCCTTCTGAAGCATCAGAGATTAAATAT
TGTTCAAACTAATAGTTATTGCTGTGGCTTTTAATTTTATCTTTGGAAGATAGCTATATGGTAA
CTCATCATTAACCAGAACACCTCTCCCCTCAAATTCCCTGACCAAGTTGTGCAGCTTGAGCAAA
TGCCGAAAGAGGGTATTATGGGTGGGTGGTGTGGGCTTGCAAATACAAGCTTGGAGGTGAGACA
TGGCCAGACATGACTCCTGCTTCCCCTTAGGAAGTAAATCTTACTTATGGCTGTGAACTGCTTG
GAGTCCAGGATGCCCAGATGTGAGGGGCAGATGAAGGGAATGTTGCTGGAAAGGTGCCTTTTAA
GGCTGCTGAGAATTTCTGGACTGTGTCCTGATGGACACAGCACCATCAAAGCCCAGAATTTCTG
AAAATGGTGACAAGGTTAACATAAGGACAACAAATACTCCACCCTGTCATGGTATGTGGGGTGT
GGGTGTGGCGGTTTCTGTGTACGTTTGCTCATACACGCACATCCAAAAGCCTGTGCCTCATTCC
TGGCCATGGGTGAGGACTTGGTCTGTCACGGCTGATGAGGACTCCCACAACCAGCCAAGTTATG
TCTTATTATACACCCCCAGAAAGAGAGAAAGCTGCCTTCTGGAGGACTGATTCCGCATGCTATA
TTCAGCTGAGTTCATTTCTGTGTCTATTTCAACCCATAACCTGAAGAATGATCACCTTATTCCT
TATTCATTAATTTTCTTGATTAATAGGGAAACTTGGGAATAGCTATAAAGTAGAACTTGGGTGG
AACCTGGGGCCCTGGCATCACACAAGTGTGATTAGGATGGTCAAGGTCATCAGGAGTACAGCCT
ATTATATTCCCACATCCTGAGAAAGGTCATTTCTCCCACACACGACAAAGTCACAGACATCTTC
CACCTGCCACTAGGCATCCTCATCCTACTGACATGCCCATTTCTCCAGTTTTCTTAATCTGAGA
CTCCCTTCCCTTGTTTTTTAAAGATACCGTGCTTCTCCACATCCTCATCCTTCAAGGAGCATAT
TTTGCTCTAAGGATGGTCTTTGGGATTCAAGAATAGAATAATAAATCCAAACTTGGTCATTCCC
ATTTTGAAGAGATGCAAGAGGGCCCAGTGAGGACATCCGCCTCCCTGAAAGTGGTGCTAGACAG
AGCTGAGGTCATTGTATCTGTGTATTCACATAGGATTTCTCTTCATTCAGCTTGAATTGATGGG
GAGGGAGGTAAGAGTAGGGTCAGAGTTACTCATCCCTTTTCAAAGAATTGTGGGTGGAAGTTTG
TAAAGGCCATTCATTTGATTTTCAAAATCAAAGCAACAGCTCTACTTCCACTTGGCCTTAGATC
TCTGCTATACCCTGCCATAGCCTTGATGCCACTGGGCACAAGCCACCTGCCAAATACAGGAGTG
GCCTCTCCCAGCCTGGCATGATAGGGGGGTCTGTGCCCTCAGATGTGTTGACAGCTGCTCTTCT
GAATTGCCACACCTGTGCTACACTTGGAATTCTGCGCTCTGACTCTGCAGGGTAGGACCACGTG
CCATCTCACACAGAGGTCAACCGATAAGCCCACTCACTCGTACATGCCTTCTTCCACAGTGGGA
AGCATGATCTGGCAGGGGCCGCCCTGTAGGCTGGGGATGGGCTGCTGTGTGAATGTTGACGTTC
GTTTCATGGAGAAAGGGGAGGTGAAAGATTGAAGAGCAGGTTCCCGTCAATGTTCTGAGTTCGA
GCTGGAGGTGTAGATTGAATAGTCTACATGGTCTGTGAGTGTGTGAGATGAACCCTTCCATCCT
TTGACACCTGGTTGTATGTGTAGGCTAAGAAGGACCCTCCTGTCAGTGTGCAAAGCTGTAATCT
CATGGACTAGAGGAGAGGGGGCCAAGGGGATGGACAGGAGAAGTCATGCAGAATCTAAGCAGGA
ATGCAGATAGAACACATCTAGGCTCTTTTCCCCAGGAGAGTGATGATGGAGCATATAGATCTGG
CTCAAATTCAGCCTCCATCACTTACCAGTCAGGAACCCTGGCGATATCACTTTAACTTTCTGAA
CCTTAGAGTCTTCACCTATAAGACAGGGAAAATAATACCATCCTTTCAAGATTGTTGAGATAAA
TAAGTGATATAAAACATGTAAAGCTTAGTTCTGGCCACAGTGTAGCTACTCAATAAATGATAAT
ACTACC

hide sequence

RefSeq Acc Id:

XM_034945559 ⟹ XP_034801450

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	42,322,726 - 42,331,139 (+)	NCBI
NHGRI_mPanPan1	1	42,288,611 - 42,297,126 (+)	NCBI

RefSeq Acc Id:

XM_055108804 ⟹ XP_054964779

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	42,322,742 - 42,356,466 (+)	NCBI
NHGRI_mPanPan1	1	42,288,748 - 42,322,433 (+)	NCBI

RefSeq Acc Id:

XM_055108806 ⟹ XP_054964781

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	42,326,431 - 42,354,638 (+)	NCBI
NHGRI_mPanPan1	1	42,292,482 - 42,320,603 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003822954	(Get FASTA)	NCBI Sequence Viewer
	XP_034801450	(Get FASTA)	NCBI Sequence Viewer
	XP_054964779	(Get FASTA)	NCBI Sequence Viewer
	XP_054964781	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000000052.1
	ENSPPAP00000000053.1
	ENSPPAP00000021438.1

RefSeq Acc Id:

XP_003822954 ⟸ XM_003822906

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPERELWPAGPGSEPVTRVGSCDSMMSSTSTRSGSSDSSYDFLSAEEKECLLFLEETIGSLDTE
ADSGLSTDESEPATTPRGFRALPITQPTPRGGPEETITQQGRAPRTVTESSSSHPPEPQGLGLR
SGSYSLPRNIHIARSQNFRKSTTQASSHTPGEPGRLAPEPEKEQVSQSSQPRQAPASPQEAALD
LDVVLIPPPEAFRDIQPEQCREASLPEGPGQQGHTPQLHTPSSSQEREQTPSEAMSQKAKETGS
TGYTQQPQPPPAGLPQNARAEDAPLPSGEDPNSRLAPLTTPKPRKLPPNIVLKSSRSSFHSDPQ
HWLSRHTEAAPGDSGLISCSLQEQRKARKEALEKLGLPQDQDEPGLHLSKPTSSIRPKETRAQH
LSPAPGLAQPAAPAQASAAIPAAGKALAQAPAPAPGPAQGPLPMKSPAPGNVAASKSMPIPIPK
APRANSALTPPKPESGLTLQESNTPGLRQMNFKSNTLERSGVGLSSYLSSEKDASPKTSTSLGK
GSFLDKISPSVLRNSRPRPASLGTGKDFAGIQVGKLADLEQEQSSKHLSYQGQSRDKLPRPPCV
SVKISPKGVPNEHRREALKKLGLLKE

hide sequence

Ensembl Acc Id:

ENSPPAP00000000052 ⟸ ENSPPAT00000000100

Ensembl Acc Id:

ENSPPAP00000000053 ⟸ ENSPPAT00000000103

Ensembl Acc Id:

ENSPPAP00000021438 ⟸ ENSPPAT00000044240

RefSeq Acc Id:	XP_034801450 ⟸ XM_034945559
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AW59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054964779 ⟸ XM_055108804
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054964781 ⟸ XM_055108806
- Peptide Label:	isoform X2

Protein Domains

OTU

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000000106	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAG00000033947	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000000100.1	UniProtKB/TrEMBL
	ENSPPAT00000000103.1	UniProtKB/TrEMBL
	ENSPPAT00000044240.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.70.80	UniProtKB/TrEMBL
InterPro	OTU1_Ubl	UniProtKB/TrEMBL
	OTU_dom	UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	SARG	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	C1H1orf116	ENTREZGENE
PANTHER	PTHR13312	UniProtKB/TrEMBL
	PTHR21555	UniProtKB/TrEMBL
	SPECIFICALLY ANDROGEN-REGULATED GENE PROTEIN	UniProtKB/TrEMBL
	UBIQUITIN THIOESTERASE OTU1	UniProtKB/TrEMBL
Pfam	OTU	UniProtKB/TrEMBL
	SARG	UniProtKB/TrEMBL
PROSITE	OTU	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A2R8Z5Q2_PANPA	UniProtKB/TrEMBL
	A0A2R8Z5Q6_PANPA	UniProtKB/TrEMBL
	A0A2R9AW59	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-04-25	YOD1	YOD1 deubiquitinase	C1H1orf116	chromosome 1 C1orf116 homolog	Symbol and/or name change	5135510	APPROVED
2023-04-20	C1H1orf116	chromosome 1 C1orf116 homolog	YOD1	YOD1 deubiquitinase	Data merged from RGD:11887220	737654	PROVISIONAL
2018-05-08	C1H1orf116	chromosome 1 C1orf116 homolog		chromosome 1 open reading frame, human C1orf116	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar