ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6) - Rat Genome Database

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Gene: ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6) Pan paniscus
Analyze
Symbol: ARL6IP6
Name: ADP ribosylation factor like GTPase 6 interacting protein 6
RGD ID: 11786713
Description: ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); nuclear inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 6-interacting protein 6; ADP-ribosylation-like factor 6 interacting protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21355,401,925 - 55,444,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B55,417,570 - 55,461,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B40,017,540 - 40,061,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B157,255,439 - 157,299,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B157,255,434 - 157,298,857 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ARL6IP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21355,401,925 - 55,444,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B55,417,570 - 55,461,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B40,017,540 - 40,061,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B157,255,439 - 157,299,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B157,255,434 - 157,298,857 (+)Ensemblpanpan1.1panPan2
ARL6IP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382152,717,648 - 152,762,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2152,717,647 - 152,762,396 (+)EnsemblGRCh38hg38GRCh38
GRCh372153,574,162 - 153,618,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362153,283,373 - 153,325,669 (+)NCBINCBI36Build 36hg18NCBI36
Build 342153,400,637 - 153,442,931NCBI
Celera2147,188,879 - 147,232,317 (+)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2145,460,777 - 145,504,138 (+)NCBIHuRef
CHM1_12153,580,440 - 153,623,806 (+)NCBICHM1_1
T2T-CHM13v2.02153,170,194 - 153,214,953 (+)NCBIT2T-CHM13v2.0
Arl6ip6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39253,082,096 - 53,109,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl253,081,738 - 53,109,232 (+)EnsemblGRCm39 Ensembl
GRCm38253,192,084 - 53,219,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl253,191,726 - 53,219,220 (+)EnsemblGRCm38mm10GRCm38
MGSCv37253,051,118 - 53,078,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36253,014,120 - 53,041,035 (+)NCBIMGSCv36mm8
MGSCv36253,723,963 - 53,751,274 (+)NCBIMGSCv36mm8
Celera254,933,637 - 54,962,312 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.69NCBI
Arl6ip6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8358,098,978 - 58,126,962 (+)NCBIGRCr8
mRatBN7.2337,689,994 - 37,720,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl337,690,382 - 37,718,018 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx341,062,985 - 41,088,913 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0349,647,802 - 49,673,731 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0347,432,644 - 47,458,576 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0338,742,072 - 38,768,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl338,742,072 - 38,768,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,839,462 - 43,867,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4334,722,398 - 34,748,336 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera335,828,759 - 35,854,697 (+)NCBICelera
Cytogenetic Map3q12NCBI
Arl6ip6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544018,131,030 - 18,166,804 (+)NCBIChiLan1.0ChiLan1.0
ARL6IP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11953,711,210 - 53,733,467 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,710,992 - 53,732,278 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,710,992 - 53,732,278 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,925,972 - 27,948,172 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01955,223,048 - 55,245,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1955,222,176 - 55,244,679 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,938,750 - 53,960,956 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01954,008,750 - 54,031,157 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01955,473,743 - 55,496,125 (+)NCBIUU_Cfam_GSD_1.0
Arl6ip6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303116,654,494 - 116,694,501 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646924,926,597 - 24,963,379 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646924,928,861 - 24,963,344 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL6IP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1560,440,308 - 60,471,316 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11560,439,588 - 60,472,991 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21567,085,917 - 67,118,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL6IP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11038,151,631 - 38,194,800 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1038,152,268 - 38,195,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040161,372,652 - 161,416,164 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl6ip6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473213,256,591 - 13,293,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473213,260,118 - 13,292,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000029284   ⟹   ENSPPAP00000007180
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B157,255,434 - 157,298,857 (+)Ensembl
RefSeq Acc Id: XM_003832723   ⟹   XP_003832771
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21355,401,925 - 55,444,976 (+)NCBI
NHGRI_mPanPan12B55,417,570 - 55,461,583 (+)NCBI
Mhudiblu_PPA_v02B40,017,540 - 40,061,039 (+)NCBI
PanPan1.12B157,255,439 - 157,298,993 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024927878   ⟹   XP_024783646
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21355,403,262 - 55,444,976 (+)NCBI
NHGRI_mPanPan12B55,417,976 - 55,461,583 (+)NCBI
Mhudiblu_PPA_v02B40,018,682 - 40,061,039 (+)NCBI
PanPan1.12B157,256,610 - 157,299,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034954299   ⟹   XP_034810190
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21355,402,423 - 55,421,466 (+)NCBI
NHGRI_mPanPan12B55,417,570 - 55,436,446 (+)NCBI
Mhudiblu_PPA_v02B40,018,129 - 40,037,088 (+)NCBI
RefSeq Acc Id: XM_055108590   ⟹   XP_054964565
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21355,402,423 - 55,444,976 (+)NCBI
NHGRI_mPanPan12B55,417,570 - 55,461,583 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832771 (Get FASTA)   NCBI Sequence Viewer  
  XP_024783646 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810190 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964565 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000007180
  ENSPPAP00000007180.1
Reference Protein Sequences
RefSeq Acc Id: XP_003832771   ⟸   XM_003832723
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZWA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024783646   ⟸   XM_024927878
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034810190   ⟸   XM_034954299
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000007180   ⟸   ENSPPAT00000029284
RefSeq Acc Id: XP_054964565   ⟸   XM_055108590
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026309 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000029284.1 UniProtKB/TrEMBL
InterPro ARL6IP6 UniProtKB/TrEMBL
KEGG Report pps:100974770 UniProtKB/TrEMBL
NCBI Gene ARL6IP6 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 6-INTERACTING PROTEIN 6 UniProtKB/TrEMBL
  PTHR28640 UniProtKB/TrEMBL
Pfam ARL6IP6 UniProtKB/TrEMBL
UniProt A0A2R8ZWA4 ENTREZGENE, UniProtKB/TrEMBL