ZFAND6 (zinc finger AN1-type containing 6) - Rat Genome Database

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Gene: ZFAND6 (zinc finger AN1-type containing 6) Pan paniscus
Analyze
Symbol: ZFAND6 (Ensembl: FAH)
Name: zinc finger AN1-type containing 6 (Ensembl:fumarylacetoacetate hydrolase)
RGD ID: 11786411
Description: ENCODES a protein that exhibits DNA binding (inferred); fumarylacetoacetase activity (inferred); hydrolase activity (inferred); INVOLVED IN cellular response to tumor necrosis factor (ortholog); negative regulation of apoptotic process (ortholog); regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AN1-type zinc finger protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21669,306,795 - 69,392,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11573,471,591 - 73,557,324 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,023,678 - 59,107,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11577,996,265 - 78,067,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,048,571 - 78,115,098 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZFAND6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21669,306,795 - 69,392,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11573,471,591 - 73,557,324 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,023,678 - 59,107,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11577,996,265 - 78,067,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,048,571 - 78,115,098 (+)Ensemblpanpan1.1panPan2
ZFAND6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381580,058,951 - 80,138,393 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1580,059,568 - 80,140,292 (+)EnsemblGRCh38hg38GRCh38
GRCh371580,352,018 - 80,430,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361578,139,076 - 78,217,767 (+)NCBINCBI36Build 36hg18NCBI36
Build 341578,139,075 - 78,217,765NCBI
Celera1557,289,219 - 57,367,921 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1557,109,927 - 57,188,777 (+)NCBIHuRef
CHM1_11580,469,860 - 80,548,702 (+)NCBICHM1_1
T2T-CHM13v2.01577,923,092 - 78,001,808 (+)NCBIT2T-CHM13v2.0
Zfand6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39784,264,253 - 84,339,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl784,262,974 - 84,339,167 (-)EnsemblGRCm39 Ensembl
GRCm38784,615,045 - 84,690,016 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl784,613,766 - 84,689,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv37791,763,564 - 91,827,861 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36784,491,239 - 84,555,536 (-)NCBIMGSCv36mm8
Celera782,017,675 - 82,086,800 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.36NCBI
Zfand6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,990,099 - 148,061,221 (-)NCBIGRCr8
mRatBN7.21138,581,002 - 138,652,052 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1138,581,002 - 138,651,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1146,533,717 - 146,604,324 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,702,718 - 153,773,333 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01146,577,924 - 146,648,533 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01146,745,850 - 146,823,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,745,859 - 146,823,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,672,431 - 147,750,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,885,701 - 140,960,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,964,112 - 141,038,892 (-)NCBI
Celera1130,599,032 - 130,612,301 (-)NCBICelera
Cytogenetic Map1q31NCBI
Zfand6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955533877,985 - 894,934 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955533823,883 - 895,713 (+)NCBIChiLan1.0ChiLan1.0
ZFAND6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,341,757 - 57,406,205 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,342,448 - 57,406,182 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha360,000,188 - 60,064,463 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,768,504 - 57,833,026 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,768,543 - 57,823,947 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,274,102 - 57,338,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,480,865 - 57,545,311 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,827,874 - 57,892,235 (-)NCBIUU_Cfam_GSD_1.0
Zfand6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,215,856 - 120,279,115 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,063,981 - 38,127,191 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647138,063,932 - 38,127,190 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl748,967,579 - 49,034,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1748,967,402 - 49,034,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2754,475,829 - 54,542,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,274,721 - 3,356,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl263,274,194 - 3,314,527 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048138,518,274 - 138,601,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624941967,345 - 1,027,018 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624941953,407 - 1,025,082 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003810726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034939265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055098935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003810725   ⟹   XP_003810773
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,321,936 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,486,720 - 73,557,324 (+)NCBI
Mhudiblu_PPA_v01559,036,734 - 59,107,270 (+)NCBI
PanPan1.11577,996,265 - 78,067,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003810726   ⟹   XP_003810774
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,321,985 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,486,770 - 73,557,324 (+)NCBI
Mhudiblu_PPA_v01559,036,722 - 59,107,270 (+)NCBI
PanPan1.11577,996,265 - 78,067,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034939263   ⟹   XP_034795154
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,306,795 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,471,591 - 73,557,324 (+)NCBI
Mhudiblu_PPA_v01559,023,678 - 59,107,270 (+)NCBI
RefSeq Acc Id: XM_034939264   ⟹   XP_034795155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,306,795 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,471,591 - 73,557,324 (+)NCBI
Mhudiblu_PPA_v01559,023,768 - 59,107,270 (+)NCBI
RefSeq Acc Id: XM_034939265   ⟹   XP_034795156
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,308,999 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,473,795 - 73,557,324 (+)NCBI
Mhudiblu_PPA_v01559,023,768 - 59,107,270 (+)NCBI
RefSeq Acc Id: XM_055098928   ⟹   XP_054954903
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,287 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,087 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098929   ⟹   XP_054954904
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,563 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,380 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098930   ⟹   XP_054954905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,322,007 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,486,851 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098931   ⟹   XP_054954906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,567 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,384 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098932   ⟹   XP_054954907
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,563 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,380 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098934   ⟹   XP_054954909
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,584 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,401 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_055098935   ⟹   XP_054954910
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,283 - 69,392,607 (+)NCBI
NHGRI_mPanPan11573,474,095 - 73,557,324 (+)NCBI
RefSeq Acc Id: XM_063596872   ⟹   XP_063452942
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,321,996 - 69,392,607 (+)NCBI
RefSeq Acc Id: XM_063596873   ⟹   XP_063452943
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,322,067 - 69,392,607 (+)NCBI
RefSeq Acc Id: XM_063596874   ⟹   XP_063452944
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21669,309,296 - 69,392,607 (+)NCBI
RefSeq Acc Id: XP_003810773   ⟸   XM_003810725
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003810774   ⟸   XM_003810726
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034795154   ⟸   XM_034939263
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034795156   ⟸   XM_034939265
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034795155   ⟸   XM_034939264
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954903   ⟸   XM_055098928
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954910   ⟸   XM_055098935
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954904   ⟸   XM_055098929
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954907   ⟸   XM_055098932
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954906   ⟸   XM_055098931
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954909   ⟸   XM_055098934
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054954905   ⟸   XM_055098930
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452944   ⟸   XM_063596874
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452942   ⟸   XM_063596872
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452943   ⟸   XM_063596873
- UniProtKB: A0A2R9CIA8 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064600.1 UniProtKB/TrEMBL
  ENSPPAT00000064602.1 UniProtKB/TrEMBL
  ENSPPAT00000064607.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4770 UniProtKB/TrEMBL
  4.10.1110.10 UniProtKB/TrEMBL
  Fumarylacetoacetase, N-terminal domain UniProtKB/TrEMBL
  Fumarylacetoacetase-like, C-terminal domain UniProtKB/TrEMBL
InterPro AN1-like_Znf UniProtKB/TrEMBL
  AN1_A20_ZnFinger UniProtKB/TrEMBL
  Fumarylacetoacetase UniProtKB/TrEMBL
  Fumarylacetoacetase-like_C UniProtKB/TrEMBL
  Fumarylacetoacetase_C_sf UniProtKB/TrEMBL
  Fumarylacetoacetase_N UniProtKB/TrEMBL
  Fumarylacetoacetase_N_sf UniProtKB/TrEMBL
  Znf_A20 UniProtKB/TrEMBL
  Znf_AN1 UniProtKB/TrEMBL
KEGG Report pps:100969593 UniProtKB/TrEMBL
NCBI Gene ZFAND6 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN UniProtKB/TrEMBL
  AN1-TYPE ZINC FINGER PROTEIN 6 UniProtKB/TrEMBL
  FUMARYLACETOACETASE UniProtKB/TrEMBL
  FUMARYLACETOACETASE UniProtKB/TrEMBL
Pfam FAA_hydrolase UniProtKB/TrEMBL
  FAA_hydrolase_N UniProtKB/TrEMBL
  zf-A20 UniProtKB/TrEMBL
  zf-AN1 UniProtKB/TrEMBL
PROSITE ZF_A20 UniProtKB/TrEMBL
  ZF_AN1 UniProtKB/TrEMBL
SMART ZnF_A20 UniProtKB/TrEMBL
  ZnF_AN1 UniProtKB/TrEMBL
Superfamily-SCOP FAH UniProtKB/TrEMBL
  Fumarylacetoacetate hydrolase, FAH, N-terminal domain UniProtKB/TrEMBL
  Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF118310 UniProtKB/TrEMBL
UniProt A0A2R9CI90_PANPA UniProtKB/TrEMBL
  A0A2R9CI95_PANPA UniProtKB/TrEMBL
  A0A2R9CIA8 ENTREZGENE, UniProtKB/TrEMBL