HIGD1C (HIG1 hypoxia inducible domain family member 1C) - Rat Genome Database

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Gene: HIGD1C (HIG1 hypoxia inducible domain family member 1C) Pan paniscus
Analyze
Symbol: HIGD1C
Name: HIG1 hypoxia inducible domain family member 1C
RGD ID: 11780989
Description: INVOLVED IN mitochondrial respirasome assembly (inferred); negative regulation of apoptotic process (inferred); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HIG1 domain family member 1C
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,212,743 - 43,234,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,213,077 - 43,230,893 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,783,394 - 37,801,283 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,686,651 - 38,702,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,686,651 - 38,702,109 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HIGD1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,212,743 - 43,234,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,213,077 - 43,230,893 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,783,394 - 37,801,283 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,686,651 - 38,702,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,686,651 - 38,702,109 (-)Ensemblpanpan1.1panPan2
HIGD1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,931,110 - 50,972,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,952,538 - 50,970,607 (+)EnsemblGRCh38hg38GRCh38
GRCh371251,346,327 - 51,364,390 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,634,049 - 49,650,556 (+)NCBINCBI36Build 36hg18NCBI36
Celera1250,150,064 - 50,166,514 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,380,603 - 48,396,265 (+)NCBIHuRef
CHM1_11251,314,095 - 51,330,602 (+)NCBICHM1_1
T2T-CHM13v2.01250,896,613 - 50,935,936 (+)NCBIT2T-CHM13v2.0
Higd1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,262,466 - 100,281,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,262,423 - 100,281,845 (+)EnsemblGRCm39 Ensembl
GRCm3815100,364,585 - 100,383,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,364,542 - 100,383,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715100,195,016 - 100,214,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,192,619 - 100,211,989 (+)NCBIMGSCv36mm8
Celera15102,515,318 - 102,535,060 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.28NCBI
Higd1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,356,525 - 133,377,172 (+)NCBIGRCr8
mRatBN7.27131,477,730 - 131,498,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,478,519 - 131,498,214 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07142,000,612 - 142,021,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,001,338 - 142,020,705 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,808,957 - 139,829,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7127,956,845 - 127,976,902 (+)NCBICelera
Cytogenetic Map7q36NCBI
HIGD1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,826,329 - 3,844,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,827,104 - 3,843,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,406,493 - 42,429,992 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,873,872 - 3,897,655 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,873,939 - 3,890,215 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,840,583 - 3,864,047 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,827,876 - 3,851,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,802,957 - 42,826,462 (+)NCBIUU_Cfam_GSD_1.0
Higd1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,578,154 - 64,592,513 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,573,831 - 8,586,447 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,572,339 - 8,586,972 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIGD1C
(Sus scrofa - pig)		 No map positions available.
HIGD1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,167,800 - 47,186,330 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,169,472 - 47,185,898 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037198,916,540 - 198,932,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Higd1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,201,515 - 1,221,230 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248161,201,515 - 1,221,230 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046548   ⟹   ENSPPAP00000023723
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1238,686,651 - 38,702,109 (-)Ensembl
RefSeq Acc Id: XM_003825871   ⟹   XP_003825919
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21043,212,743 - 43,234,132 (-)NCBI
NHGRI_mPanPan11243,213,178 - 43,230,893 (-)NCBI
Mhudiblu_PPA_v01237,783,394 - 37,801,283 (-)NCBI
PanPan1.11238,686,651 - 38,702,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_057299459   ⟹   XP_057155442
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21043,212,743 - 43,234,132 (-)NCBI
NHGRI_mPanPan11243,213,077 - 43,230,893 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003825919 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155442 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023723.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825919   ⟸   XM_003825871
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000023723   ⟸   ENSPPAT00000046548
RefSeq Acc Id: XP_057155442   ⟸   XM_057299459
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B916 (UniProtKB/TrEMBL)
Protein Domains
HIG1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046548.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1320 UniProtKB/TrEMBL
InterPro Hypoxia_induced_domain UniProtKB/TrEMBL
KEGG Report pps:100985161 UniProtKB/TrEMBL
NCBI Gene HIGD1C ENTREZGENE
PANTHER HIG1 DOMAIN FAMILY MEMBER 1C UniProtKB/TrEMBL
  HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED UniProtKB/TrEMBL
Pfam HIG_1_N UniProtKB/TrEMBL
PROSITE HIG1 UniProtKB/TrEMBL
UniProt A0A2R9B916 ENTREZGENE, UniProtKB/TrEMBL