SPAG16 (sperm associated antigen 16) - Rat Genome Database

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Gene: SPAG16 (sperm associated antigen 16) Pan paniscus
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Symbol: SPAG16
Name: sperm associated antigen 16
RGD ID: 11769501
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cerebrospinal fluid circulation (ortholog); mucociliary clearance (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); Neurodevelopmental Disorders (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN axonemal central apparatus (inferred); axoneme (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213115,905,940 - 117,032,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B115,920,901 - 117,047,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B100,539,441 - 101,666,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B219,014,837 - 220,139,499 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B219,014,837 - 220,139,314 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPAG16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213115,905,940 - 117,032,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B115,920,901 - 117,047,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B100,539,441 - 101,666,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B219,014,837 - 220,139,499 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B219,014,837 - 220,139,314 (+)Ensemblpanpan1.1panPan2
SPAG16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382213,284,464 - 214,410,501 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2213,284,389 - 214,410,501 (+)EnsemblGRCh38hg38GRCh38
GRCh372214,149,188 - 215,275,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362213,857,361 - 214,983,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 342213,974,671 - 215,100,728NCBI
Celera2207,912,975 - 209,043,467 (+)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2206,000,485 - 207,131,268 (+)NCBIHuRef
CHM1_12214,155,231 - 215,281,740 (+)NCBICHM1_1
T2T-CHM13v2.02213,765,296 - 214,894,995 (+)NCBIT2T-CHM13v2.0
Spag16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39169,866,031 - 70,764,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl169,866,129 - 70,764,291 (+)EnsemblGRCm39 Ensembl
GRCm38169,826,872 - 70,725,132 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl169,826,970 - 70,725,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv37169,873,562 - 70,771,706 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36169,760,196 - 70,658,340 (+)NCBIMGSCv36mm8
Celera170,384,754 - 71,280,888 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map135.04NCBI
Spag16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8978,782,596 - 79,702,265 (+)NCBIGRCr8
mRatBN7.2971,333,005 - 72,252,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl971,332,992 - 72,252,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx979,825,538 - 80,732,229 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0984,954,409 - 85,861,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0983,345,271 - 84,247,181 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0977,027,626 - 77,833,476 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl977,320,726 - 77,833,281 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0976,807,090 - 77,608,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4968,853,232 - 69,738,268 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera968,899,031 - 69,691,040 (+)NCBICelera
Cytogenetic Map9q33NCBI
Spag16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554571,543,946 - 2,492,686 (-)NCBIChiLan1.0ChiLan1.0
SPAG16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13720,782,855 - 21,690,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3720,782,867 - 21,690,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3721,661,941 - 21,681,718 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha3721,711,108 - 22,448,683 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03720,775,567 - 21,698,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3720,775,576 - 21,698,595 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13720,681,773 - 21,588,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03720,648,305 - 21,556,000 (+)NCBIUU_Cfam_GSD_1.0
Spag16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303169,218,001 - 170,086,786 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365863,264,953 - 3,407,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15115,809,187 - 116,761,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115115,809,152 - 116,760,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215128,757,040 - 128,897,379 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103217787
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11099,044,097 - 100,215,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040100,301,727 - 100,360,834 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spag16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247652,548,748 - 2,886,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000065027   ⟹   ENSPPAP00000042098
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,014,837 - 219,109,240 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000065028   ⟹   ENSPPAP00000042099
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,014,923 - 219,027,261 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000065029   ⟹   ENSPPAP00000042100
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,014,923 - 219,016,414 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000065030   ⟹   ENSPPAP00000042101
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,015,101 - 219,098,602 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000065035   ⟹   ENSPPAP00000042106
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,026,192 - 220,139,314 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000065037   ⟹   ENSPPAP00000042108
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B219,026,192 - 219,156,329 (+)Ensembl
RefSeq Acc Id: XM_003812510   ⟹   XP_003812558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213115,905,940 - 117,032,765 (+)NCBI
NHGRI_mPanPan12B115,920,901 - 117,047,727 (+)NCBI
Mhudiblu_PPA_v02B100,539,441 - 101,666,204 (+)NCBI
PanPan1.12B219,014,837 - 220,139,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055109074   ⟹   XP_054965049
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213115,906,042 - 117,032,765 (+)NCBI
NHGRI_mPanPan12B115,920,985 - 117,047,727 (+)NCBI
RefSeq Acc Id: XM_055109075   ⟹   XP_054965050
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213115,905,949 - 116,820,961 (+)NCBI
NHGRI_mPanPan12B115,920,912 - 116,835,923 (+)NCBI
RefSeq Acc Id: XP_003812558   ⟸   XM_003812510
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CJH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000042100   ⟸   ENSPPAT00000065029
Ensembl Acc Id: ENSPPAP00000042099   ⟸   ENSPPAT00000065028
Ensembl Acc Id: ENSPPAP00000042098   ⟸   ENSPPAT00000065027
Ensembl Acc Id: ENSPPAP00000042106   ⟸   ENSPPAT00000065035
Ensembl Acc Id: ENSPPAP00000042101   ⟸   ENSPPAT00000065030
Ensembl Acc Id: ENSPPAP00000042108   ⟸   ENSPPAT00000065037
RefSeq Acc Id: XP_054965050   ⟸   XM_055109075
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054965049   ⟸   XM_055109074
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CJH5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043643 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065027.1 UniProtKB/TrEMBL
  ENSPPAT00000065028.1 UniProtKB/TrEMBL
  ENSPPAT00000065029.1 UniProtKB/TrEMBL
  ENSPPAT00000065030.1 UniProtKB/TrEMBL
  ENSPPAT00000065035.1 UniProtKB/TrEMBL
  ENSPPAT00000065037.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD-F-box_domain-protein UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene SPAG16 ENTREZGENE
PANTHER SPERM-ASSOCIATED ANTIGEN 16 PROTEIN UniProtKB/TrEMBL
  WD40 REPEAT PF20 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9CJG3_PANPA UniProtKB/TrEMBL
  A0A2R9CJG9_PANPA UniProtKB/TrEMBL
  A0A2R9CJH3_PANPA UniProtKB/TrEMBL
  A0A2R9CJH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CM46_PANPA UniProtKB/TrEMBL
  A0A2R9CM56_PANPA UniProtKB/TrEMBL