SPAG16 (sperm associated antigen 16) - Rat Genome Database

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Gene: SPAG16 (sperm associated antigen 16) Canis lupus familiaris
Analyze
Symbol: SPAG16
Name: sperm associated antigen 16
RGD ID: 12315855
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cerebrospinal fluid circulation (ortholog); mucociliary clearance (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN axonemal central apparatus (inferred); axoneme (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm-associated antigen 16 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13720,782,855 - 21,690,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3720,782,867 - 21,690,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3721,661,941 - 21,681,718 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha3721,711,108 - 22,448,683 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03720,775,567 - 21,698,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3720,775,576 - 21,698,595 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13720,681,773 - 21,588,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03720,648,305 - 21,556,000 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPAG16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13720,782,855 - 21,690,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3720,782,867 - 21,690,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3721,661,941 - 21,681,718 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha3721,711,108 - 22,448,683 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03720,775,567 - 21,698,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3720,775,576 - 21,698,595 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13720,681,773 - 21,588,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03720,648,305 - 21,556,000 (+)NCBIUU_Cfam_GSD_1.0
SPAG16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382213,284,464 - 214,410,501 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2213,284,389 - 214,410,501 (+)EnsemblGRCh38hg38GRCh38
GRCh372214,149,188 - 215,275,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362213,857,361 - 214,983,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 342213,974,671 - 215,100,728NCBI
Celera2207,912,975 - 209,043,467 (+)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2206,000,485 - 207,131,268 (+)NCBIHuRef
CHM1_12214,155,231 - 215,281,740 (+)NCBICHM1_1
T2T-CHM13v2.02213,765,296 - 214,894,995 (+)NCBIT2T-CHM13v2.0
Spag16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39169,866,031 - 70,764,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl169,866,129 - 70,764,291 (+)EnsemblGRCm39 Ensembl
GRCm38169,826,872 - 70,725,132 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl169,826,970 - 70,725,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv37169,873,562 - 70,771,706 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36169,760,196 - 70,658,340 (+)NCBIMGSCv36mm8
Celera170,384,754 - 71,280,888 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map135.04NCBI
Spag16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8978,782,596 - 79,702,265 (+)NCBIGRCr8
mRatBN7.2971,333,005 - 72,252,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl971,332,992 - 72,252,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx979,825,538 - 80,732,229 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0984,954,409 - 85,861,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0983,345,271 - 84,247,181 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0977,027,626 - 77,833,476 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl977,320,726 - 77,833,281 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0976,807,090 - 77,608,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4968,853,232 - 69,738,268 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera968,899,031 - 69,691,040 (+)NCBICelera
Cytogenetic Map9q33NCBI
Spag16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554571,543,946 - 2,492,686 (-)NCBIChiLan1.0ChiLan1.0
SPAG16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213115,905,940 - 117,032,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B115,920,901 - 117,047,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B100,539,441 - 101,666,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B219,014,837 - 220,139,499 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B219,014,837 - 220,139,314 (+)Ensemblpanpan1.1panPan2
Spag16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303169,218,001 - 170,086,786 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365863,264,953 - 3,407,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15115,809,187 - 116,761,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115115,809,152 - 116,760,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215128,757,040 - 128,897,379 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103217787
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11099,044,097 - 100,215,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040100,301,727 - 100,360,834 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spag16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247652,548,748 - 2,886,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPAG16
13015 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 9 6 8 3
Low 5 5 9 2 6 2 6 6 7 6
Below cutoff 4 4 4 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005640617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005640618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038447876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038447877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038447878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038447879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038447880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038521889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000046650   ⟹   ENSCAFP00000038854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3720,782,867 - 21,690,333 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035356   ⟹   ENSCAFP00845027676
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3720,775,576 - 21,698,595 (+)Ensembl
RefSeq Acc Id: XM_038447876   ⟹   XP_038303804
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03720,775,567 - 21,698,785 (+)NCBI
RefSeq Acc Id: XM_038447877   ⟹   XP_038303805
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03720,775,567 - 21,698,785 (+)NCBI
RefSeq Acc Id: XM_038447878   ⟹   XP_038303806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03720,775,567 - 21,698,609 (+)NCBI
RefSeq Acc Id: XM_038447879   ⟹   XP_038303807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03720,775,567 - 21,546,767 (+)NCBI
RefSeq Acc Id: XM_038447880   ⟹   XP_038303808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03720,775,567 - 21,470,874 (+)NCBI
RefSeq Acc Id: XM_038463868   ⟹   XP_038319796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3721,711,108 - 22,448,683 (+)NCBI
RefSeq Acc Id: XM_038463871   ⟹   XP_038319799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3721,661,941 - 21,681,718 (+)NCBI
RefSeq Acc Id: XM_038521889   ⟹   XP_038377817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13720,681,773 - 21,588,806 (+)NCBI
RefSeq Acc Id: XM_038585670   ⟹   XP_038441598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,556,000 (+)NCBI
RefSeq Acc Id: XM_038585671   ⟹   XP_038441599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,556,000 (+)NCBI
RefSeq Acc Id: XM_038585672   ⟹   XP_038441600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,555,824 (+)NCBI
RefSeq Acc Id: XM_038585673   ⟹   XP_038441601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,377,700 (+)NCBI
RefSeq Acc Id: XM_038585674   ⟹   XP_038441602
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,403,981 (+)NCBI
RefSeq Acc Id: XM_038585675   ⟹   XP_038441603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03720,648,305 - 21,327,780 (+)NCBI
RefSeq Acc Id: XM_038650048   ⟹   XP_038505976
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBI
RefSeq Acc Id: XM_038650049   ⟹   XP_038505977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBI
RefSeq Acc Id: XM_038650050   ⟹   XP_038505978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03720,630,489 - 21,539,329 (+)NCBI
RefSeq Acc Id: XM_038650051   ⟹   XP_038505979
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03720,630,489 - 21,387,248 (+)NCBI
RefSeq Acc Id: XM_038650052   ⟹   XP_038505980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03720,630,489 - 21,311,353 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000038854   ⟸   ENSCAFT00000046650
RefSeq Acc Id: XP_038377817   ⟸   XM_038521889
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038505978   ⟸   XM_038650050
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038505976   ⟸   XM_038650048
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038505977   ⟸   XM_038650049
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038505979   ⟸   XM_038650051
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038505980   ⟸   XM_038650052
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038303804   ⟸   XM_038447876
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NV40 (UniProtKB/TrEMBL),   A0A8I3P1Z0 (UniProtKB/TrEMBL),   A0A8C0SWW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038303805   ⟸   XM_038447877
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SWW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038303806   ⟸   XM_038447878
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038303807   ⟸   XM_038447879
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038303808   ⟸   XM_038447880
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038319799   ⟸   XM_038463871
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038319796   ⟸   XM_038463868
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038441598   ⟸   XM_038585670
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SWW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441599   ⟸   XM_038585671
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SWW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441600   ⟸   XM_038585672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038441602   ⟸   XM_038585674
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038441601   ⟸   XM_038585673
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038441603   ⟸   XM_038585675
- Peptide Label: isoform X5
RefSeq Acc Id: ENSCAFP00845027676   ⟸   ENSCAFT00845035356


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014255 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018188 UniProtKB/TrEMBL
  ENSCAFG00040017308 UniProtKB/TrEMBL
  ENSCAFG00845020068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046650.4 UniProtKB/TrEMBL
  ENSCAFT00030033517.1 UniProtKB/TrEMBL
  ENSCAFT00040031974.1 UniProtKB/TrEMBL
  ENSCAFT00040031998.1 UniProtKB/TrEMBL
  ENSCAFT00040032039.1 UniProtKB/TrEMBL
  ENSCAFT00845035356 ENTREZGENE
  ENSCAFT00845035356.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene SPAG16 ENTREZGENE
PANTHER SPERM-ASSOCIATED ANTIGEN 16 PROTEIN UniProtKB/TrEMBL
  WD40 REPEAT PF20 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C0NV40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SW72_CANLF UniProtKB/TrEMBL
  A0A8C0SWW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SXA3_CANLF UniProtKB/TrEMBL
  A0A8I3P1Z0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0ST80_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:111736 ENTREZGENE