USP42 (ubiquitin specific peptidase 42) - Rat Genome Database

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Gene: USP42 (ubiquitin specific peptidase 42) Pan paniscus
Analyze
Symbol: USP42
Name: ubiquitin specific peptidase 42
RGD ID: 11759174
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); INVOLVED IN protein deubiquitination (inferred); regulation of apoptotic process (inferred); FOUND IN cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 42
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,512,164 - 11,568,825 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,836,873 - 59,893,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v077,283,212 - 7,339,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,301,881 - 6,357,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,307,329 - 6,357,763 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
USP42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,512,164 - 11,568,825 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,836,873 - 59,893,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v077,283,212 - 7,339,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,301,881 - 6,357,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,307,329 - 6,357,763 (+)Ensemblpanpan1.1panPan2
USP42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,081,241 - 6,161,564 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,104,949 - 6,161,564 (+)EnsemblGRCh38hg38GRCh38
GRCh3776,144,580 - 6,201,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,111,076 - 6,167,720 (+)NCBINCBI36Build 36hg18NCBI36
Celera76,533,917 - 6,590,564 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,022,858 - 6,073,300 (+)NCBIHuRef
CHM1_176,144,305 - 6,200,795 (+)NCBICHM1_1
T2T-CHM13v2.076,197,991 - 6,280,940 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,190,906 - 6,247,551 (+)NCBI
Usp42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,696,077 - 143,741,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,696,080 - 143,718,035 (-)EnsemblGRCm39 Ensembl
GRCm385143,710,325 - 143,759,753 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,710,325 - 143,732,280 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,471,194 - 144,493,149 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,966,583 - 143,987,842 (-)NCBIMGSCv36mm8
Celera5140,752,888 - 140,775,236 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.5NCBI
Usp42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,903,110 - 15,954,429 (+)NCBIGRCr8
mRatBN7.21210,800,864 - 10,840,785 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,802,581 - 10,840,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,629,499 - 11,648,040 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,252,791 - 12,271,334 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,276,762 - 11,295,321 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,840,131 - 12,878,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,859,661 - 12,877,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,881,194 - 14,922,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,151,534 - 11,170,068 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,181,461 - 11,196,973 (+)NCBI
Celera1212,619,047 - 12,637,594 (+)NCBICelera
Cytogenetic Map12p11NCBI
USP42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,504,491 - 11,554,720 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,508,685 - 11,557,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,108,684 - 13,180,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,483,126 - 11,555,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,505,058 - 11,555,271 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,359,785 - 11,431,771 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,339,096 - 11,411,004 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,565,774 - 11,637,658 (+)NCBIUU_Cfam_GSD_1.0
Usp42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,571,419 - 139,636,425 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936750308,808 - 349,252 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936750307,517 - 349,212 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,006,241 - 5,048,282 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,002,406 - 5,048,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,091,988 - 5,128,036 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,292,782 - 15,366,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,314,782 - 15,363,986 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102717,775 - 774,863 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474031,194,125 - 31,218,998 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474031,191,511 - 31,234,186 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000036020   ⟹   ENSPPAP00000013350
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl76,307,329 - 6,357,763 (+)Ensembl
RefSeq Acc Id: XM_034963665   ⟹   XP_034819556
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,514,269 - 11,568,825 (-)NCBI
NHGRI_mPanPan1759,838,978 - 59,893,529 (-)NCBI
Mhudiblu_PPA_v077,287,272 - 7,339,854 (-)NCBI
RefSeq Acc Id: XM_034963666   ⟹   XP_034819557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,512,164 - 11,568,819 (-)NCBI
NHGRI_mPanPan1759,836,873 - 59,893,529 (-)NCBI
Mhudiblu_PPA_v077,283,212 - 7,339,854 (-)NCBI
RefSeq Acc Id: XM_034963668   ⟹   XP_034819559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,512,164 - 11,558,192 (-)NCBI
NHGRI_mPanPan1759,836,873 - 59,882,878 (-)NCBI
Mhudiblu_PPA_v077,283,212 - 7,328,762 (-)NCBI
RefSeq Acc Id: XM_063605619   ⟹   XP_063461689
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2611,512,164 - 11,545,884 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034819556 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819557 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819559 (Get FASTA)   NCBI Sequence Viewer  
  XP_063461689 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013350.1
RefSeq Acc Id: XP_034819557   ⟸   XM_034963666
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A8W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819559   ⟸   XM_034963668
- Peptide Label: isoform X3
- UniProtKB: A0A2R9A8W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819556   ⟸   XM_034963665
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A8W9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000013350   ⟸   ENSPPAT00000036020
RefSeq Acc Id: XP_063461689   ⟸   XM_063605619
- Peptide Label: isoform X3
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036020.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene USP42 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A2R9A8W9 ENTREZGENE, UniProtKB/TrEMBL