Advanced Search (OLGA)

Gene: USP42 (ubiquitin specific peptidase 42) Pan paniscus

Subscribe to Updates

Analyze

Symbol:

USP42

Name:

ubiquitin specific peptidase 42

RGD ID:

11759174

Description:

ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); INVOLVED IN protein deubiquitination (inferred); regulation of apoptotic process (inferred); FOUND IN cytosol (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin carboxyl-terminal hydrolase 42

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	11,512,164 - 11,568,825 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	59,836,873 - 59,893,529 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	7,283,212 - 7,339,854 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	6,301,881 - 6,357,763 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	6,307,329 - 6,357,763 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP42	Bonobo	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	150520179		InterPro	GO_REF:0000002
USP42	Bonobo	protein deubiquitination	involved_in	IEA	UniProtKB:B2RQC2\|ensembl:ENSMUSP00000053955	150520179		Ensembl	GO_REF:0000107
USP42	Bonobo	protein deubiquitination	involved_in	IEA	PANTHER:PTN002768016	150520179		TreeGrafter	GO_REF:0000118
USP42	Bonobo	regulation of apoptotic process	involved_in	IEA	PANTHER:PTN002768016	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP42	Bonobo	cytosol	located_in	IEA	PANTHER:PTN002768016	150520179		TreeGrafter	GO_REF:0000118
USP42	Bonobo	nucleus	located_in	IEA	PANTHER:PTN002768016	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
USP42	Bonobo	cysteine-type deubiquitinase activity	enables	IEA	PANTHER:PTN002768016	150520179		TreeGrafter	GO_REF:0000118
USP42	Bonobo	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394\|InterPro:IPR018200	150520179		InterPro	GO_REF:0000002
USP42	Bonobo	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:B2RQC2\|UniProtKB:Q9H9J4\|ensembl:ENSMUSP00000053955\|ensembl:ENSP00000301962	150520179		Ensembl	GO_REF:0000107
USP42	Bonobo	protein binding	enables	ISO	UniProtKB:P04637	9068941	PMID:22085928	IntAct	PMID:22085928

PMID:22301074	PMID:30032202

USP42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	11,512,164 - 11,568,825 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	59,836,873 - 59,893,529 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	7,283,212 - 7,339,854 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	6,301,881 - 6,357,763 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	6,307,329 - 6,357,763 (+)	Ensembl	panpan1.1		panPan2

USP42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	6,081,241 - 6,161,564 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	6,104,949 - 6,161,564 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	6,144,580 - 6,201,195 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	6,111,076 - 6,167,720 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	6,533,917 - 6,590,564 (-)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	6,022,858 - 6,073,300 (+)	NCBI		HuRef
CHM1_1	7	6,144,305 - 6,200,795 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	6,197,991 - 6,280,940 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	6,190,906 - 6,247,551 (+)	NCBI

Usp42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,696,077 - 143,741,600 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,696,080 - 143,718,035 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	143,710,325 - 143,759,753 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,710,325 - 143,732,280 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	144,471,194 - 144,493,149 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,966,583 - 143,987,842 (-)	NCBI		MGSCv36	mm8
Celera	5	140,752,888 - 140,775,236 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	82.5	NCBI

Usp42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	15,903,110 - 15,954,429 (+)	NCBI		GRCr8
mRatBN7.2	12	10,800,864 - 10,840,785 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,802,581 - 10,840,785 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	11,629,499 - 11,648,040 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,252,791 - 12,271,334 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,276,762 - 11,295,321 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	12,840,131 - 12,878,207 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	12,859,661 - 12,877,495 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	14,881,194 - 14,922,553 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	11,151,534 - 11,170,068 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	11,181,461 - 11,196,973 (+)	NCBI
Celera	12	12,619,047 - 12,637,594 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

USP42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,504,491 - 11,554,720 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	11,508,685 - 11,557,185 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	13,108,684 - 13,180,539 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,483,126 - 11,555,275 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	11,505,058 - 11,555,271 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	11,359,785 - 11,431,771 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	11,339,096 - 11,411,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,565,774 - 11,637,658 (+)	NCBI		UU_Cfam_GSD_1.0

Usp42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,571,419 - 139,636,425 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	308,808 - 349,252 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	307,517 - 349,212 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	5,006,241 - 5,048,282 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	5,002,406 - 5,048,327 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	5,091,988 - 5,128,036 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	15,292,782 - 15,366,029 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	15,314,782 - 15,363,986 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666102	717,775 - 774,863 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	31,194,125 - 31,218,998 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	31,191,511 - 31,234,186 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_034963665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034963666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034963667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034963668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000036020 ⟹ ENSPPAP00000013350

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	6,307,329 - 6,357,763 (+)	Ensembl

RefSeq Acc Id:

XM_034963665 ⟹ XP_034819556

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	11,514,269 - 11,568,825 (-)	NCBI
NHGRI_mPanPan1	7	59,838,978 - 59,893,529 (-)	NCBI
Mhudiblu_PPA_v0	7	7,287,272 - 7,339,854 (-)	NCBI

RefSeq Acc Id:

XM_034963666 ⟹ XP_034819557

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	11,512,164 - 11,568,819 (-)	NCBI
NHGRI_mPanPan1	7	59,836,873 - 59,893,529 (-)	NCBI
Mhudiblu_PPA_v0	7	7,283,212 - 7,339,854 (-)	NCBI

RefSeq Acc Id:

XM_034963668 ⟹ XP_034819559

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	11,512,164 - 11,558,192 (-)	NCBI
NHGRI_mPanPan1	7	59,836,873 - 59,882,878 (-)	NCBI
Mhudiblu_PPA_v0	7	7,283,212 - 7,328,762 (-)	NCBI

RefSeq Acc Id:

XM_063605619 ⟹ XP_063461689

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	11,512,164 - 11,545,884 (-)	NCBI


Protein RefSeqs	XP_034819556	(Get FASTA)	NCBI Sequence Viewer
	XP_034819557	(Get FASTA)	NCBI Sequence Viewer
	XP_034819559	(Get FASTA)	NCBI Sequence Viewer
	XP_063461689	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000013350.1

RefSeq Acc Id:	XP_034819557 ⟸ XM_034963666
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A8W9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034819559 ⟸ XM_034963668
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9A8W9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034819556 ⟸ XM_034963665
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A8W9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000013350 ⟸ ENSPPAT00000036020

RefSeq Acc Id:	XP_063461689 ⟸ XM_063605619
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9A8W9 (UniProtKB/TrEMBL)

Protein Domains

USP

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029844	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000036020.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/TrEMBL
	USP_CS	UniProtKB/TrEMBL
	USP_dom	UniProtKB/TrEMBL
NCBI Gene	USP42	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42	UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/TrEMBL
PROSITE	USP_1	UniProtKB/TrEMBL
	USP_2	UniProtKB/TrEMBL
	USP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A2R9A8W9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message