METTL2A (methyltransferase 2A, tRNA N3-cytidine) - Rat Genome Database

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Gene: METTL2A (methyltransferase 2A, tRNA N3-cytidine) Pan paniscus
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Symbol: METTL2A
Name: methyltransferase 2A, tRNA N3-cytidine
RGD ID: 11754145
Description: ENCODES a protein that exhibits tRNA (cytidine-3-)-methyltransferase activity (ortholog); INVOLVED IN tRNA metabolic process (ortholog); tRNA methylation (ortholog); tRNA modification (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100980737; LOC100995083; methyltransferase 2A, methylcytidine; methyltransferase like 2A; methyltransferase-like protein 2A; methyltransferase-like protein 2B; tRNA N(3)-methylcytidine methyltransferase METTL2A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21978,580,093 - 78,607,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11783,397,935 - 83,427,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01756,488,631 - 56,515,661 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,900,046 - 30,904,284 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
METTL2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21978,580,093 - 78,607,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11783,397,935 - 83,427,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01756,488,631 - 56,515,661 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,900,046 - 30,904,284 (-)NCBIpanpan1.1PanPan1.1panPan2
METTL2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381762,423,897 - 62,453,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1762,423,875 - 62,453,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371760,501,258 - 60,530,746 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361757,854,998 - 57,881,186 (+)NCBINCBI36Build 36hg18NCBI36
Celera1754,888,315 - 54,914,521 (+)NCBICelera
Cytogenetic Map17q23.2NCBI
HuRef1755,867,895 - 55,893,867 (+)NCBIHuRef
CHM1_11760,565,596 - 60,591,801 (+)NCBICHM1_1
T2T-CHM13v2.01763,293,823 - 63,323,315 (+)NCBIT2T-CHM13v2.0
Mettl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911105,017,251 - 105,031,972 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11105,017,251 - 105,031,220 (+)EnsemblGRCm39 Ensembl
GRCm3811105,126,425 - 105,141,146 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,126,425 - 105,140,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711104,987,739 - 105,002,460 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611104,942,577 - 104,956,491 (+)NCBIMGSCv36mm8
Celera11116,859,290 - 116,874,015 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.61NCBI
Mettl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81090,595,411 - 90,609,234 (+)NCBIGRCr8
mRatBN7.21090,095,527 - 90,109,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,095,527 - 90,119,528 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1095,144,903 - 95,158,717 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01094,608,084 - 94,621,902 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01090,026,012 - 90,039,862 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01093,353,944 - 93,367,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1093,354,003 - 93,379,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01093,112,426 - 93,126,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41094,522,903 - 94,536,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11094,537,273 - 94,550,848 (+)NCBI
Celera1088,778,569 - 88,792,395 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Mettl2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554789,263,817 - 9,277,850 (-)NCBIChiLan1.0ChiLan1.0
METTL2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,645,280 - 10,679,826 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha911,672,841 - 11,689,951 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0912,308,397 - 12,325,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl912,308,426 - 12,323,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1911,255,049 - 11,272,176 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,258,972 - 16,276,148 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,263,439 - 16,280,556 (-)NCBIUU_Cfam_GSD_1.0
Mettl2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560215,932,166 - 15,947,584 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365413,247,046 - 3,262,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METTL2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11216,291,721 - 16,308,556 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,181,512 - 16,198,586 (+)NCBISscrofa10.2Sscrofa10.2susScr3
METTL2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11658,828,438 - 58,854,284 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607729,466,788 - 29,492,321 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mettl2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248496,059,350 - 6,072,198 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034942649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034942649   ⟹   XP_034798540
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21978,580,093 - 78,607,567 (+)NCBI
NHGRI_mPanPan11783,397,935 - 83,427,897 (+)NCBI
Mhudiblu_PPA_v01756,488,631 - 56,515,661 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034798540 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034798540   ⟸   XM_034942649


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100980737 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-30 METTL2A  methyltransferase 2A, tRNA N3-cytidine  METTL2A  methyltransferase 2A, methylcytidine  Symbol and/or name change 5135510 APPROVED
2021-05-25 METTL2A  methyltransferase 2A, methylcytidine  METTL2A  methyltransferase like 2A  Symbol and/or name change 5135510 APPROVED
2020-07-01 METTL2A  methyltransferase like 2A  LOC100980737  methyltransferase-like protein 2A  Symbol and/or name change 5135510 APPROVED
2020-06-11 LOC100980737  methyltransferase-like protein 2A  LOC100995083  methyltransferase-like protein 2B  Data merged from RGD:11698940 737654 PROVISIONAL