TINAG (tubulointerstitial nephritis antigen) - Rat Genome Database

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Gene: TINAG (tubulointerstitial nephritis antigen) Pan paniscus
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Symbol: TINAG
Name: tubulointerstitial nephritis antigen
RGD ID: 11754007
Description: ENCODES a protein that exhibits cysteine-type peptidase activity (inferred); INVOLVED IN cell adhesion (inferred); proteolysis (inferred); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN basement membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2568,780,315 - 68,862,227 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1664,656,891 - 64,738,823 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0653,861,919 - 53,945,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1655,499,195 - 55,581,273 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl655,499,752 - 55,581,273 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TINAGBonoboDiabetic Nephropathies  ISOTINAG (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19634143


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TINAGBonobocell adhesion involved_inIEAUniProtKB:Q9UJW2 and ensembl:ENSP00000259782150520179 EnsemblGO_REF:0000107
TINAGBonoboproteolysis involved_inIEAInterPro:IPR000668150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TINAGBonobobasement membrane located_inIEAUniProtKB:Q9UJW2 and ensembl:ENSP00000259782150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TINAGBonobocysteine-type peptidase activity enablesIEAARBA:ARBA00027409150520179 UniProtGO_REF:0000117
TINAGBonobocysteine-type peptidase activity enablesIEAInterPro:IPR000668 and InterPro:IPR013128150520179 InterProGO_REF:0000002

PMID:22301074   PMID:30032202  



TINAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2568,780,315 - 68,862,227 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1664,656,891 - 64,738,823 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0653,861,919 - 53,945,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1655,499,195 - 55,581,273 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl655,499,752 - 55,581,273 (+)Ensemblpanpan1.1panPan2
TINAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38654,307,862 - 54,390,142 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl654,307,859 - 54,390,142 (+)EnsemblGRCh38hg38GRCh38
GRCh37654,173,239 - 54,254,940 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36654,281,162 - 54,362,872 (+)NCBINCBI36Build 36hg18NCBI36
Build 34654,281,161 - 54,362,870NCBI
Celera655,835,406 - 55,917,161 (+)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef654,006,797 - 54,088,545 (+)NCBIHuRef
CHM1_1654,169,072 - 54,250,812 (+)NCBICHM1_1
T2T-CHM13v2.0654,147,922 - 54,230,307 (+)NCBIT2T-CHM13v2.0
Tinag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39976,858,980 - 76,953,084 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl976,858,975 - 76,953,076 (-)EnsemblGRCm39 Ensembl
GRCm38976,951,698 - 77,045,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl976,951,693 - 77,045,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37976,799,505 - 76,893,588 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36976,737,607 - 76,831,635 (-)NCBIMGSCv36mm8
Celera974,124,104 - 74,218,134 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.67NCBI
Tinag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8886,680,441 - 86,765,485 (-)NCBIGRCr8
mRatBN7.2877,800,031 - 77,885,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl877,800,032 - 77,885,077 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx883,276,974 - 83,362,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0881,553,612 - 81,638,691 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0879,376,319 - 79,461,402 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0884,122,113 - 84,320,714 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl884,279,229 - 84,320,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0883,850,917 - 83,892,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0883,701,248 - 83,707,015 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4881,947,234 - 82,032,994 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1881,966,287 - 82,052,047 (+)NCBI
Celera877,559,246 - 77,643,998 (-)NCBICelera
Cytogenetic Map8q24NCBI
Tinag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554111,717,026 - 1,810,055 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554111,718,969 - 1,809,370 (-)NCBIChiLan1.0ChiLan1.0
TINAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11221,787,042 - 21,879,867 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1221,786,669 - 21,879,091 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1221,678,221 - 21,770,538 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01222,290,935 - 22,384,182 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1222,291,568 - 22,383,681 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11221,776,256 - 21,868,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01221,892,394 - 21,984,392 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01222,024,071 - 22,116,481 (+)NCBIUU_Cfam_GSD_1.0
Tinag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494657,282,207 - 57,355,074 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364766,605,128 - 6,677,995 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364766,605,128 - 6,677,995 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TINAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl726,446,306 - 26,522,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1726,448,612 - 26,522,993 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2730,958,003 - 31,030,257 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TINAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11717,130,641 - 17,214,277 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1717,130,385 - 17,213,903 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605823,306,834 - 23,391,078 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tinag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248501,653,926 - 1,766,839 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248501,653,926 - 1,766,591 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_003828936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008954370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000039374   ⟹   ENSPPAP00000016676
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl655,499,752 - 55,581,273 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000039384   ⟹   ENSPPAP00000016686
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl655,499,898 - 55,581,046 (+)Ensembl
RefSeq Acc Id: XM_003828936   ⟹   XP_003828984
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2568,780,315 - 68,862,227 (+)NCBI
NHGRI_mPanPan1664,656,891 - 64,738,823 (+)NCBI
Mhudiblu_PPA_v0653,863,791 - 53,945,691 (+)NCBI
PanPan1.1655,499,752 - 55,581,273 (+)NCBI
Sequence:
Protein RefSeqs XP_003828984 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016676.1
  ENSPPAP00000016686.1
RefSeq Acc Id: XP_003828984   ⟸   XM_003828936
- UniProtKB: A0A2R9AH55 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000016686   ⟸   ENSPPAT00000039384
Ensembl Acc Id: ENSPPAP00000016676   ⟸   ENSPPAT00000039374
SMB



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000031445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039374.1 UniProtKB/TrEMBL
  ENSPPAT00000039384.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Pept_asp_AS UniProtKB/TrEMBL
  Peptidase_C1A UniProtKB/TrEMBL
  Peptidase_C1A_C UniProtKB/TrEMBL
  Somatomedin_B_dom UniProtKB/TrEMBL
KEGG Report pps:100992387 UniProtKB/TrEMBL
NCBI Gene TINAG ENTREZGENE
PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED UniProtKB/TrEMBL
  PTHR12411:SF274 UniProtKB/TrEMBL
Pfam Peptidase_C1 UniProtKB/TrEMBL
PROSITE SMB_1 UniProtKB/TrEMBL
  SMB_2 UniProtKB/TrEMBL
  THIOL_PROTEASE_ASN UniProtKB/TrEMBL
SMART Pept_C1 UniProtKB/TrEMBL
  SM00201 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A2R9AH55 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AH63_PANPA UniProtKB/TrEMBL
1 to 22 of 22 rows