TINAG (tubulointerstitial nephritis antigen)

Gene: TINAG (tubulointerstitial nephritis antigen) Pan paniscus

Analyze

Symbol:

TINAG

Name:

tubulointerstitial nephritis antigen

RGD ID:

11754007

Description:

ENCODES a protein that exhibits cysteine-type peptidase activity (inferred); INVOLVED IN cell adhesion (inferred); proteolysis (inferred); ASSOCIATED WITH Diabetic Nephropathies (ortholog); genetic disease (ortholog); FOUND IN basement membrane (inferred); extracellular space (inferred); lysosome (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	68,780,315 - 68,862,227 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	64,656,891 - 64,738,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	53,861,919 - 53,945,740 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	55,499,195 - 55,581,273 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	55,499,752 - 55,581,273 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Diabetic Nephropathies (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

proteolysis (IEA)

Cellular Component

basement membrane (IEA)

extracellular space (IEA)

lysosome (IEA)

Molecular Function

cysteine-type peptidase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TINAG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	68,780,315 - 68,862,227 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	64,656,891 - 64,738,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	53,861,919 - 53,945,740 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	55,499,195 - 55,581,273 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	55,499,752 - 55,581,273 (+)	Ensembl	panpan1.1		panPan2

TINAG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	54,307,862 - 54,390,142 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	54,307,859 - 54,390,142 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	54,173,239 - 54,254,940 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	54,281,162 - 54,362,872 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	54,281,161 - 54,362,870	NCBI
Celera	6	55,835,406 - 55,917,161 (+)	NCBI		Celera
Cytogenetic Map	6	p12.1	NCBI
HuRef	6	54,006,797 - 54,088,545 (+)	NCBI		HuRef
CHM1_1	6	54,169,072 - 54,250,812 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	54,147,922 - 54,230,307 (+)	NCBI		T2T-CHM13v2.0

Tinag
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	76,858,980 - 76,953,084 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	76,858,975 - 76,953,076 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	76,951,698 - 77,045,802 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	76,951,693 - 77,045,794 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	76,799,505 - 76,893,588 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	76,737,607 - 76,831,635 (-)	NCBI		MGSCv36	mm8
Celera	9	74,124,104 - 74,218,134 (-)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	42.67	NCBI

Tinag
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	86,680,441 - 86,765,485 (-)	NCBI		GRCr8
mRatBN7.2	8	77,800,031 - 77,885,077 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	77,800,032 - 77,885,077 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	83,276,974 - 83,362,057 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	81,553,612 - 81,638,691 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	79,376,319 - 79,461,402 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	84,122,113 - 84,320,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	84,279,229 - 84,320,746 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	83,850,917 - 83,892,349 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	8	83,701,248 - 83,707,015 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	81,947,234 - 82,032,994 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	81,966,287 - 82,052,047 (+)	NCBI
Celera	8	77,559,246 - 77,643,998 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Tinag
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	1,717,026 - 1,810,055 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	1,718,969 - 1,809,370 (-)	NCBI	ChiLan1.0	ChiLan1.0

TINAG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	21,787,042 - 21,879,867 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	21,786,669 - 21,879,091 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	21,678,221 - 21,770,538 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	22,290,935 - 22,384,182 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	22,291,568 - 22,383,681 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	21,776,256 - 21,868,361 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	21,892,394 - 21,984,392 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	22,024,071 - 22,116,481 (+)	NCBI		UU_Cfam_GSD_1.0

Tinag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	57,282,207 - 57,355,074 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	6,605,128 - 6,677,995 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	6,605,128 - 6,677,995 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TINAG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	26,446,306 - 26,522,965 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	26,448,612 - 26,522,993 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	30,958,003 - 31,030,257 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TINAG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	17,130,641 - 17,214,277 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	17,130,385 - 17,213,903 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	23,306,834 - 23,391,078 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tinag
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624850	1,653,926 - 1,766,839 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624850	1,653,926 - 1,766,591 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008954370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000039374 ⟹ ENSPPAP00000016676

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	55,499,752 - 55,581,273 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000039384 ⟹ ENSPPAP00000016686

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	55,499,898 - 55,581,046 (+)	Ensembl

RefSeq Acc Id:

XM_003828936 ⟹ XP_003828984

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	68,780,315 - 68,862,227 (+)	NCBI
NHGRI_mPanPan1	6	64,656,891 - 64,738,823 (+)	NCBI
Mhudiblu_PPA_v0	6	53,863,791 - 53,945,691 (+)	NCBI
PanPan1.1	6	55,499,752 - 55,581,273 (+)	NCBI

Sequence:

show sequence

GAAGTATACTCATTCAAGTAAAGGATCAGTTTCAGGGTTCAGGCTGAAGTGTCTTAATGACTAG
AATTCAGGTTCCAAGGAGAAGCCCACAAGGCTAAGGGTATTGGATATAACGGAAAGTGGAAGCT
ATACCTGACTTCCAGAGAATGTGGACCGGATATAAGATCTTAATCTTCTCTTATCTTACTACAG
AAATCTGGATGGAGAAGCAGTATTTATCTCAAAGAGAAGTGGACCTAGAGGCTTATTTCACTAG
GAATCACACTGTTTTGCAAGGTACTCGATTCAAAAGAGCCATTTTCCAAGGGCAATACTGTAGA
AATTTTGGCTGTTGTGAAGACAGAGATGATGGCTGTGTCACTGAGTTCTATGCGGCGAATGCGT
TGTGCTACTGTGATAAATTCTGTGACAGAGAAAATTCTGATTGCTGTCCTGACTACAAGTCCTT
TTGCCGTGAAGAGAAAGAATGGCCTCCTCACACACAGCCTTGGTATCCAGAAGGTTGCTTCAAA
GATGGTCAACATTATGAAGAGGGATCAGTAATTAAAGAAAACTGCAACTCCTGCACATGCTCAG
GACAGCAATGGAAATGTTCCCAGCATGTATGCCTTGTTCGTCCAGAATTAATTGAACAGGTCAA
TAAAGGAGACTATGGATGGACAGCACAGAATTACAGCCAATTTTGGGGAATGACTTTAGAAGAT
GGTTTTAAATTTCGCCTTGGCACTTTGCCACCTAGTCCCATGCTCCTGAGCATGAATGAAATGA
CAGCTTCTTTACCTGCAACAACTGATCTTCCAGAGTTTTTTATTGCTTCTTATAAATGGCCTGG
ATGGACTCATGGCCCATTGGATCAAAAAAATTGTGCTGCATCCTGGGCATTTTCCACTGCAAGT
GTGGCTGCTGACCGAATAGCAATTCAGTCTAAGGGTCGATACACGGCCAATCTATCCCCTCAGA
ATTTGATCTCTTGCTGTGCCAAGAACCGTCATGGATGCAATAGTGGAAGCATCGATAGGGCTTG
GTGGTACCTGAGAAAACGTGGACTGGTATCCCACGCATGCTATCCACTTTTCAAAGACCACAAT
GCTACCAACAATGGATGTGCCATGGCAAGCAGGTCTGATGGGCGAGGAAAACGGCATGCCACGA
AGCCATGTCCCAACAATGTAGAAAAATCTAACAGGATCTATCAATGTTCTCCTCCATACAGAGT
CTCTTCCAACGAAACTGAGATAATGAAAGAAATCATGCAAAATGGACCAGTTCAAGCCATAATG
CAAGTCCGTGAAGATTTCTTCCATTATAAGACAGGGATATACAGACATGTTACCAGCACAAATA
AAGAATCAGAAAAATATCGAAAGCTTCAGACACATGCAGTCAAACTCACTGGATGGGGCACACT
GAGAGGAGCACAAGGGCAGAAAGAAAAATTTTGGATTGCTGCCAATTCCTGGGGAAAGTCATGG
GGAGAGAATGGCTATTTCAGGATTCTTCGAGGAGTAAATGAGTCCGACATTGAAAAGTTGATTA
TCGCAGCCTGGGGCCAACTGACAAGTTCTGATGAACCATAACATATCATTAAATTTCCATAAGG
TCATGCCTTTAAGTAACCCCCTAAATTGAAGTTTAGCAATATGACATTCTTGGTGACAGTGGAA
TCTTTGTCTCTTCACCGTGTTAACATAATCTATCTATTTTCTTATTTTCCCCTCTGGTCTATGC
TTCTGCTTCCTTCACATTACTGAGCATTAACAACACCAATAAAGGACAGCAGAGTCCCTAAATG
TCTTTAAAGTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003828984	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000016676.1
	ENSPPAP00000016686.1

RefSeq Acc Id:

XP_003828984 ⟸ XM_003828936

- UniProtKB:

A0A2R9AH55 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWTGYKILIFSYLTTEIWMEKQYLSQREVDLEAYFTRNHTVLQGTRFKRAIFQGQYCRNFGCCE
DRDDGCVTEFYAANALCYCDKFCDRENSDCCPDYKSFCREEKEWPPHTQPWYPEGCFKDGQHYE
EGSVIKENCNSCTCSGQQWKCSQHVCLVRPELIEQVNKGDYGWTAQNYSQFWGMTLEDGFKFRL
GTLPPSPMLLSMNEMTASLPATTDLPEFFIASYKWPGWTHGPLDQKNCAASWAFSTASVAADRI
AIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDRAWWYLRKRGLVSHACYPLFKDHNATNNGC
AMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAIMQVREDF
FHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYF
RILRGVNESDIEKLIIAAWGQLTSSDEP

hide sequence

RefSeq Acc Id:

ENSPPAP00000016686 ⟸ ENSPPAT00000039384

RefSeq Acc Id:

ENSPPAP00000016676 ⟸ ENSPPAT00000039374

Protein Domains

SMB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031445	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000039374.1	UniProtKB/TrEMBL
	ENSPPAT00000039384.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_asp_AS	UniProtKB/TrEMBL
	Peptidase_C1A	UniProtKB/TrEMBL
	Peptidase_C1A_C	UniProtKB/TrEMBL
	Somatomedin_B_dom	UniProtKB/TrEMBL
KEGG Report	pps:100992387	UniProtKB/TrEMBL
NCBI Gene	TINAG	ENTREZGENE
PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	UniProtKB/TrEMBL
	PTHR12411:SF274	UniProtKB/TrEMBL
Pfam	Peptidase_C1	UniProtKB/TrEMBL
PROSITE	SMB_1	UniProtKB/TrEMBL
	SMB_2	UniProtKB/TrEMBL
	THIOL_PROTEASE_ASN	UniProtKB/TrEMBL
SMART	Pept_C1	UniProtKB/TrEMBL
	SM00201	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A2R9AH55	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AH63_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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