SRRM2 (serine/arginine repetitive matrix 2) - Rat Genome Database

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Gene: SRRM2 (serine/arginine repetitive matrix 2) Pan paniscus
Analyze
Symbol: SRRM2
Name: serine/arginine repetitive matrix 2
RGD ID: 11752117
Description: ENCODES a protein that exhibits C2H2 zinc finger domain binding (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Autosomal Dominant Intellectual Developmental Disorder 72 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN Cajal body (inferred); catalytic step 2 spliceosome (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine repetitive matrix protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,257,612 - 3,276,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,038,665 - 7,057,379 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,612,386 - 1,631,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,865,810 - 2,884,902 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,865,810 - 2,884,902 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SRRM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,257,612 - 3,276,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,038,665 - 7,057,379 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,612,386 - 1,631,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,865,810 - 2,884,902 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,865,810 - 2,884,902 (+)Ensemblpanpan1.1panPan2
SRRM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,752,638 - 2,771,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,752,626 - 2,772,538 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,802,639 - 2,821,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,742,331 - 2,761,414 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,742,654 - 2,761,412NCBI
Celera163,001,895 - 3,020,980 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,769,571 - 2,788,653 (+)NCBIHuRef
CHM1_1162,802,386 - 2,821,457 (+)NCBICHM1_1
T2T-CHM13v2.0162,772,853 - 2,791,630 (+)NCBIT2T-CHM13v2.0
Srrm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,009,501 - 24,043,715 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,009,506 - 24,043,715 (+)EnsemblGRCm39 Ensembl
GRCm381723,790,527 - 23,824,741 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,790,532 - 23,824,741 (+)EnsemblGRCm38mm10GRCm38
MGSCv371723,940,154 - 23,961,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,530,848 - 23,552,358 (+)NCBIMGSCv36mm8
Celera1724,297,071 - 24,319,127 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.07NCBI
Srrm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,320,059 - 13,353,337 (+)NCBIGRCr8
mRatBN7.21012,815,471 - 12,848,750 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,815,471 - 12,848,751 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,560,149 - 17,593,313 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,048,938 - 17,082,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,548,336 - 12,581,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,128,820 - 13,162,956 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,145,099 - 13,162,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,948,282 - 12,982,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,066,871 - 13,081,983 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,051,311 - 13,084,720 (+)NCBI
Celera1012,510,616 - 12,543,690 (+)NCBICelera
Cytogenetic Map10q12NCBI
Srrm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,482,154 - 14,497,639 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,478,350 - 14,498,152 (+)NCBIChiLan1.0ChiLan1.0
SRRM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,291,847 - 38,310,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,291,842 - 38,393,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,532,055 - 39,550,491 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,602,410 - 38,620,868 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,602,405 - 38,620,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,288,079 - 38,306,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,260,566 - 38,278,981 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,736,665 - 38,755,113 (+)NCBIUU_Cfam_GSD_1.0
Srrm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,413,162 - 105,429,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,280,155 - 1,295,779 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,280,104 - 1,296,301 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,275,288 - 39,293,747 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,275,274 - 39,293,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,613,487 - 40,631,943 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRRM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,570,566 - 2,589,355 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,571,109 - 2,585,640 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,322,637 - 28,342,292 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srrm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824594,790 - 609,750 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824594,203 - 613,225 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008972573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034940935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034940936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055100636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063598192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000041565   ⟹   ENSPPAP00000018823
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,865,810 - 2,884,902 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000041571   ⟹   ENSPPAP00000018829
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,869,851 - 2,884,329 (+)Ensembl
RefSeq Acc Id: XM_003805549   ⟹   XP_003805597
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,276,327 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,057,379 (+)NCBI
Mhudiblu_PPA_v0161,612,398 - 1,631,177 (+)NCBI
PanPan1.1162,865,810 - 2,884,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008972573   ⟹   XP_008970821
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,276,327 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,057,379 (+)NCBI
Mhudiblu_PPA_v0161,612,398 - 1,631,174 (+)NCBI
PanPan1.1162,866,169 - 2,884,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034940936   ⟹   XP_034796827
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,265,347 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,046,397 (+)NCBI
Mhudiblu_PPA_v0161,612,398 - 1,619,564 (+)NCBI
RefSeq Acc Id: XM_055100630   ⟹   XP_054956605
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,275,553 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,056,605 (+)NCBI
RefSeq Acc Id: XM_055100632   ⟹   XP_054956607
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,275,376 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,056,428 (+)NCBI
RefSeq Acc Id: XM_055100636   ⟹   XP_054956611
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,274,056 (+)NCBI
NHGRI_mPanPan1167,038,666 - 7,055,096 (+)NCBI
RefSeq Acc Id: XM_063598187   ⟹   XP_063454257
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,629 - 3,275,553 (+)NCBI
RefSeq Acc Id: XM_063598188   ⟹   XP_063454258
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,275,553 (+)NCBI
RefSeq Acc Id: XM_063598189   ⟹   XP_063454259
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,614 - 3,275,553 (+)NCBI
RefSeq Acc Id: XM_063598190   ⟹   XP_063454260
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,257,612 - 3,275,553 (+)NCBI
RefSeq Acc Id: XM_063598191   ⟹   XP_063454261
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,264,701 - 3,275,553 (+)NCBI
RefSeq Acc Id: XM_063598192   ⟹   XP_063454262
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2183,273,156 - 3,275,553 (+)NCBI
RefSeq Acc Id: XP_003805597   ⟸   XM_003805549
- Peptide Label: isoform X3
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008970821   ⟸   XM_008972573
- Peptide Label: isoform X4
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034796827   ⟸   XM_034940936
- Peptide Label: isoform X9
Ensembl Acc Id: ENSPPAP00000018823   ⟸   ENSPPAT00000041565
Ensembl Acc Id: ENSPPAP00000018829   ⟸   ENSPPAT00000041571
RefSeq Acc Id: XP_054956605   ⟸   XM_055100630
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956607   ⟸   XM_055100632
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054956611   ⟸   XM_055100636
- Peptide Label: isoform X7
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454260   ⟸   XM_063598190
- Peptide Label: isoform X6
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454259   ⟸   XM_063598189
- Peptide Label: isoform X5
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454258   ⟸   XM_063598188
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454257   ⟸   XM_063598187
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454261   ⟸   XM_063598191
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063454262   ⟸   XM_063598192
- Peptide Label: isoform X10
Protein Domains
Spt5 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032551 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041565.1 UniProtKB/TrEMBL
  ENSPPAT00000041571.1 UniProtKB/TrEMBL
InterPro CWC21 UniProtKB/TrEMBL
  mRNA_splic_Cwf21_dom UniProtKB/TrEMBL
  Spt5_C_dom UniProtKB/TrEMBL
  SRRM2_cwf21 UniProtKB/TrEMBL
KEGG Report pps:100989622 UniProtKB/TrEMBL
NCBI Gene SRRM2 ENTREZGENE
PANTHER RHODANESE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SERINE/ARGININE REPETITIVE MATRIX 2 UniProtKB/TrEMBL
Pfam cwf21 UniProtKB/TrEMBL
SMART CTD UniProtKB/TrEMBL
UniProt A0A2R9ANV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AV67_PANPA UniProtKB/TrEMBL