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Gene: TBC1D23 (TBC1 domain family member 23) Pan paniscus

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Symbol:

TBC1D23

Name:

TBC1 domain family member 23

RGD ID:

11734517

Description:

INVOLVED IN neuron projection development (ortholog); positive regulation of interleukin-6 production (ortholog); regulation of inflammatory response (ortholog); ASSOCIATED WITH genetic disease (ortholog); pontocerebellar hypoplasia (ortholog); pontocerebellar hypoplasia type 11 (ortholog); FOUND IN WASH complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	98,203,295 - 98,268,245 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	98,208,092 - 98,273,027 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	97,353,716 - 97,418,083 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	104,035,926 - 104,100,345 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	104,049,807 - 104,098,760 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

pontocerebellar hypoplasia (ISO)

pontocerebellar hypoplasia type 11 (ISO)

pontocerebellar hypoplasia type 1B (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEA)

embryonic brain development (IEA)

neuron projection development (ISO)

positive regulation of interleukin-6 production (ISO)

regulation of inflammatory response (ISO)

regulation of tumor necrosis factor production (ISO)

retrograde transport, endosome to Golgi (IEA)

vesicle tethering to Golgi (IEA)

vesicle-mediated transport (ISO)

Cellular Component

cytoplasmic vesicle (IEA)

cytosol (IEA)

Golgi apparatus (IEA)

trans-Golgi network (IEA)

WASH complex (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TBC1D23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	98,203,295 - 98,268,245 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	98,208,092 - 98,273,027 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	97,353,716 - 97,418,083 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	104,035,926 - 104,100,345 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	104,049,807 - 104,098,760 (+)	Ensembl	panpan1.1		panPan2

TBC1D23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	100,260,992 - 100,325,238 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	100,260,992 - 100,325,251 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	99,979,836 - 100,044,082 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	101,462,546 - 101,525,205 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	98,370,265 - 98,434,664 (+)	NCBI		Celera
Cytogenetic Map	3	q12.1-q12.2	NCBI
HuRef	3	97,347,499 - 97,411,898 (+)	NCBI		HuRef
CHM1_1	3	99,942,694 - 100,007,124 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	102,966,332 - 103,030,580 (+)	NCBI		T2T-CHM13v2.0

Tbc1d23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	56,989,225 - 57,051,891 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	56,989,225 - 57,051,867 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	57,168,862 - 57,231,528 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	57,168,862 - 57,231,504 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	57,168,975 - 57,231,579 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	57,090,221 - 57,152,825 (-)	NCBI		MGSCv36	mm8
Celera	16	57,502,248 - 57,557,867 (-)	NCBI		Celera
Cytogenetic Map	16	C1.1	NCBI
cM Map	16	34.22	NCBI

Tbc1d23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	56,772,476 - 56,830,625 (+)	NCBI		GRCr8
mRatBN7.2	11	43,303,355 - 43,361,507 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	43,303,355 - 43,361,503 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	52,071,380 - 52,129,543 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	44,732,981 - 44,791,147 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	43,857,073 - 43,915,241 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	45,401,396 - 45,459,841 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	45,401,403 - 45,459,821 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	48,594,422 - 48,652,592 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	44,274,253 - 44,285,320 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	44,284,324 - 44,342,915 (+)	NCBI
Celera	11	43,092,874 - 43,151,132 (+)	NCBI		Celera
Cytogenetic Map	11	q12	NCBI

Tbc1d23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	1,810,096 - 1,852,828 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	1,811,132 - 1,849,348 (+)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	6,883,199 - 6,939,788 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	6,883,336 - 6,938,318 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	7,038,751 - 7,095,338 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	7,021,917 - 7,078,683 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	7,021,999 - 7,078,680 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	6,909,713 - 6,966,471 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	6,957,938 - 7,014,541 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	7,287,702 - 7,344,394 (+)	NCBI		UU_Cfam_GSD_1.0

Tbc1d23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	150,078,658 - 150,117,616 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936630	2,978,138 - 3,036,161 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936630	2,977,477 - 3,049,209 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	158,665,077 - 158,729,274 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	158,665,083 - 158,729,285 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	168,397,816 - 168,416,370 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	80,555,115 - 80,619,251 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	80,554,669 - 80,619,234 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	85,954,511 - 86,018,874 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	13,685,089 - 13,753,046 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624789	13,685,458 - 13,749,820 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008975395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008975396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000053947 ⟹ ENSPPAP00000031083

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,049,807 - 104,098,760 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053950 ⟹ ENSPPAP00000031086

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,051,772 - 104,098,760 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053954 ⟹ ENSPPAP00000031090

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,052,936 - 104,098,760 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053956 ⟹ ENSPPAP00000031092

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,052,936 - 104,098,760 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053962 ⟹ ENSPPAP00000031098

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,056,861 - 104,098,760 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053966 ⟹ ENSPPAP00000031102

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,056,861 - 104,096,051 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000053968 ⟹ ENSPPAP00000031104

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	104,062,351 - 104,098,760 (+)	Ensembl

RefSeq Acc Id:

XM_008975395 ⟹ XP_008973643

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	98,203,295 - 98,268,245 (+)	NCBI
NHGRI_mPanPan1	3	98,208,691 - 98,273,027 (+)	NCBI
Mhudiblu_PPA_v0	3	97,353,716 - 97,418,070 (+)	NCBI
PanPan1.1	3	104,035,926 - 104,100,345 (+)	NCBI

Sequence:

show sequence

AAGTCTCCTCCCCCAAGACGCTGCCTTTCGGCCTCGGGACGCCGTGACGTTGCGTTCCTCCAGT
CCCTTGCCACCTCCCTCTTTCTTCCCCTCTGGGAAAGCTCAGTGCTGGACTTCCGAAGACCTTT
TACGACATTGAGTCTCGGAGTTGGTCTCAGCGCCGGATCCACTTTTCGGCAAAGTGACGTGGAC
GTCAACAGCAATGGCGGAAGGAGAAGATGTGCCGCCGCTGCCAACGGCGAGCGGCGACGGCTGG
GAAAAAGATCTTGAAGAAGCTCTGGAAGCAGGAGGTTGTGATCTTGAAACGTTGAGAAATATAA
TTCAAGGAAGACCGCTGCCTGCTGATCTGAGGGCCAAAGTTTGGAAGATTGCTCTGAATGTTGC
AGGAAAAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACTTGCCAGAACAGAACACTATT
CACAAAGATTGCCTGCGGTTTATTGACCAGCTTTCAGTGCCAGAGGAGAAGGCAGCAGAATTAC
TTTTGGATATTGAATCTGTAATTACCTTTTATTGTAAATCACGTAACATTAAATATAGCACATC
CCTTAGCTGGATACATCTACTGAAACCATTGGTGCATCTTCAACTGCCACGCAGCGATTTATAC
AACTGCTTTTATGCCATAATGAATAAGTACATTCCCAGGGATTGTTCCCAGAAAGGGAGACCAT
TTCATCTCTTCAGGTTGCTCATCCAATACCATGAGCCTGAGCTTTGTTCTTATCTTGATACAAA
GAAAATTACTCCAGACTCCTATGCACTCAACTGGCTTGGAAGTCTTTTTGCATGTTACTGTTCC
ATTGAAGTCACTCAGGCAATATGGGATGGATATCTACAACAAGCAGATCCATTTTTTATTTATT
TCTTAATGTTAATTATCCTTGTTAATGCAAAAGAAGTTATTTTAACACAAGAGTCAGACAGCAA
AGAAGAAGTTATCCAGTTCTTGGAAAATACTCCATCCAGTCTGAATATAGAAGATATAGAAGAC
CTTTTCTCTCTGGCTCAGTATTATTGCAGCAAAACACCGGCTTCTTTTAGGAAGGATAATCACC
ATCTCTTTGGTAGTACTTTGTTGGGAATTAAGGATGATGATGCAGATCTGAGTCAGGCTCTTTG
TCTGGCCATCTCCGTGTCAGAGATCCTTCAAGCGAATCAGCTACAAGGGGAAGGAGTCCGGTTC
TTTGTGGTGGATTGCCGTCCTGCAGAACAATATAATGCTGGACATTTATCAACTGCTTTCCACT
TAGATTCAGACCTGATGCTCCAGAATCCATCTGAGTTTGCACAGTCAGTAAAATCCTTGCTGGA
AGCACAGAAGCAGTCCATTGAGTCTGGCTCCATAGCTGGTGGGGAGCACCTCTGTTTTATGGGC
AGTGGCAGGGAGGAAGAAGACATGTATATGAACATGGTCCTGGCACACTTTTTACAGAAGAACA
AAGAATATGTGAGTATTGCCAGTGGAGGATTTATGGCACTGCAGCAGCACCTGGCAGACATTAA
TGTGGATGGACCAGAAAATGGATATGGCCATTGGATTGCTAGTACCTCAGGCTCAAGGAGCAGT
ATCAATTCTGTTGATGGTGAATCTCCTAATGGCTCAAGTGATAGAGGAATGAAATCACTAGTAA
ATAAAATGACTGTGGCTTTGAAGACAAAATCCGTTAATGTCAGGGAAAAAGTTATCAGTTTTAT
AGAGAATACATCAACTCCTGTGGATCGAATGTCTTTCAATCTTCCTTGGCCAGACAGATCATGT
ACAGAGCGGCATGTGAGCAGCAGTGACAGAGTGGGCAAGCCTTACCGTGGCGTAAAGCCTGTTT
TCAGCATTGGGGATGAAGAAGAATACGACACAGATGAAATTGACAGTTCTTCAATGTCAGATGA
TGATAGAAAAGAGGTTGTAAACATTCAGACTTGGATAAACAAGCCAGATGTCAAACATCATTTT
CCTTGTAAAGAAGTAAAAGAAAGTGGACACATGTTTCCCAGTCATCTGTTGGTTACTGCAACAC
ATATGTACTGTTTAAGGGAGATTGTTTCACGGAAAGGATTGGCTTATATACAGTCTCGACAAGC
GCTGAATTCTGTAGTTAAAATTACATCCAAAAAAAAACATCCTGAACTCATTACCTTCAAGTAT
GGAAATAGCAGTGCTTCAGGAATAGAAATCTTGGCAATCGAAAGGTATTTGATTCCAAATGCAG
GGGATGCAACTAAAGCCATAAAACAGCAGATCATGAAAGTTTTGGATGCTTTGGAAAGTTAATA
TAAAAGAAAATTATATAAAAAGAAATTAAGACAACCAAGAGAAACATGGACATATACCTCCTGA
CTGAATACTAACTGGAGACCTTTCATTTGCTCATGGGGCTGCTTAAATAGCAGGTCTAAGAAAG
TGTAAATTATTATAATCAATCTGTGGACAGTAAACTTTTTAAAAATTTTTCTTTTGCATTTTGG
TTTTATAAAATGATGTATTATAAAGGTCAGTTATTAAATTACTTTGAAGTAACTGACCCTGTGC
CCTTATGGACTAAGTAAGGGTACAGAATGCAGTTCTGTTTTGAAGAGCTGTTTTAAGGGAACAT
GCATCACTTTCGGGTTCAAAAACAACTGTACACATACATATCTGCAGTGTCTTCACTGAAAATT
AGAGATAGAATTAGTTGAAGAGACTTCCTTAATTGCTACATTGTTTTACTCACTGAGCAATATC
AGAAACTAAAAACTTAGGTTAATAATTCACTCACTGTTTCTATTCTTCTTAAAAAGAGTGAAAT
TTTTTTAATGGAATGGTTGAAGATTCCTGCCAACTCAAAATACAGTACAGCTAGTAAAATGTTG
AAACATCAGTTTCTAAATCACCTTTGCTCCAATAGCTAATTTTTTGGACACTAAATGCTTCAAA
GATAAGAAACTTCATCCTAATGATTTCTAAAGAGCAGTTAAAAGCATTAAAATAAGTAGGTAGG
CTGTTAAGATTAAAATTAACATTTTGGGGACAGAATTGTGTCTGTAAAAATGTCATTGGTTTTT
ATTACAAGTGGATTATTTTATTCATATTTTAAAACAAGTGTTTAAGCCACATTGATTTATCCTC
ATTGAGGATTATGGTCTGTAACCACAGTAATATCCACTTATATAAATGCCAAATAATCAGAGAG
CTTATAAAGTACAATTGTTTTTGTCATCATTTTCTGAAGTTCTTTCTCTTCTTTTGGTTTTGTC
CTCTCATTGAAGTTCCAGTGGTTTGAAATTAGTTTTGGACACATTGTCTTAATGTACTGAAAAT
GGCTCTGCTGTATTTTGCAGCGTTTTTCATTTAATTTATAATGGTCCATATTAGACACATTTGG
TAAGAGAAGTCCAGGAACACATTTAGGGCTATGGAATAATATTTTGTAAAATCCATTTGGGAAG
TTGCAATACCCACAATCTGACATGTCCTAAAATGTAAGGGATTATCTCTAAGGGGTTGATGGGA
GAAATATTTAGATGTACCCTGTTAACGGCCAGTCATTTTGATTTACTTATGGAAATCAAGTGAA
TAAAAGGCAACATAATTTGGGAAATTTTATTCTAATATCTAATAAAAACAGTTTGAGTGGTTGA
AGACATCTGCATGAAATTGCACCTGGGTGTATTACTTGATACAACTCTCCCCTAAAACTGTTGT
AATTGCATTTTTTCCCTTTTCTTGGCACCCCTTTAGAAATGTACTGAAGTCTCATTTTTCACCC
ATTTCAGCCATGGGACATTTTTCATAATATTAATGTAAAGATGTTTGTGTTACTGTTTATAAAT
TACAATTGTAAATAAATTAATAGTTTGCCCAAAACTTTGTTCTTAAA

hide sequence

RefSeq Acc Id:

XM_008975396 ⟹ XP_008973644

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	98,203,295 - 98,268,245 (+)	NCBI
NHGRI_mPanPan1	3	98,208,092 - 98,273,027 (+)	NCBI
Mhudiblu_PPA_v0	3	97,353,797 - 97,418,083 (+)	NCBI
PanPan1.1	3	104,035,926 - 104,100,345 (+)	NCBI

Sequence:

show sequence

AAGTCTCCTCCCCCAAGACGCTGCCTTTCGGCCTCGGGACGCCGTGACGTTGCGTTCCTCCAGT
CCCTTGCCACCTCCCTCTTTCTTCCCCTCTGGGAAAGCTCAGTGCTGGACTTCCGAAGACCTTT
TACGACATTGAGTCTCGGAGTTGGTCTCAGCGCCGGATCCACTTTTCGGCAAAGTGACGTGGAC
GTCAACAGCAATGGCGGAAGGAGAAGATGTGCCGCCGCTGCCAACGGCGAGCGGCGACGGCTGG
GAAAAAGATCTTGAAGAAGCTCTGGAAGCAGGAGGTTGTGATCTTGAAACGTTGAGAAATATAA
TTCAAGGAAGACCGCTGCCTGCTGATCTGAGGGCCAAAGTTTGGAAGATTGCTCTGAATGTTGC
AGGAAAAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACTTGCCAGAACAGAACACTATT
CACAAAGATTGCCTGCGGTTTATTGACCAGCTTTCAGTGCCAGAGGAGAAGGCAGCAGAATTAC
TTTTGGATATTGAATCTGTAATTACCTTTTATTGTAAATCACGTAACATTAAATATAGCACATC
CCTTAGCTGGATACATCTACTGAAACCATTGGTGCATCTTCAACTGCCACGCAGCGATTTATAC
AACTGCTTTTATGCCATAATGAATAAGTACATTCCCAGGGATTGTTCCCAGAAAGGGAGACCAT
TTCATCTCTTCAGGTTGCTCATCCAATACCATGAGCCTGAGCTTTGTTCTTATCTTGATACAAA
GAAAATTACTCCAGACTCCTATGCACTCAACTGGCTTGGAAGTCTTTTTGCATGTTACTGTTCC
ATTGAAGTCACTCAGGCAATATGGGATGGATATCTACAACAAGCAGATCCATTTTTTATTTATT
TCTTAATGTTAATTATCCTTGTTAATGCAAAAGAAGTTATTTTAACACAAGAGTCAGACAGCAA
AGAAGAAGTTATCCAGTTCTTGGAAAATACTCCATCCAGTCTGAATATAGAAGATATAGAAGAC
CTTTTCTCTCTGGCTCAGTATTATTGCAGCAAAACACCGGCTTCTTTTAGGAAGGATAATCACC
ATCTCTTTGGTAGTACTTTGTTGGGAATTAAGGATGATGATGCAGATCTGAGTCAGGCTCTTTG
TCTGGCCATCTCCGTGTCAGAGATCCTTCAAGCGAATCAGCTACAAGGGGAAGGAGTCCGGTTC
TTTGTGGTGGATTGCCGTCCTGCAGAACAATATAATGCTGGACATTTATCAACTGCTTTCCACT
TAGATTCAGACCTGATGCTCCAGAATCCATCTGAGTTTGCACAGTCAGTAAAATCCTTGCTGGA
AGCACAGAAGCAGTCCATTGAGTCTGGCTCCATAGCTGGTGGGGAGCACCTCTGTTTTATGGGC
AGTGGCAGGGAGGAAGAAGACATGTATATGAACATGGTCCTGGCACACTTTTTACAGAAGAACA
AAGAATATGTGAGTATTGCCAGTGGAGGATTTATGGCACTGCAGCAGCACCTGGCAGACATTAA
TGTGGATGGACCAGAAAATGGATATGGCCATTGGATTGCTAGTACCTCAGGCTCAAGGAGCAGT
ATCAATTCTGTTGATGGTGAATCTCCTAATGGCTCAAGTGATAGAGGAATGAAATCACTAGTAA
ATAAAATGACTGTGGCTTTGAAGACAAAATCCGTTAATGTCAGGGAAAAAGTTATCAGTTTTAT
AGAGAATACATCAACTCCTGTGGATCGGCATGTGAGCAGCAGTGACAGAGTGGGCAAGCCTTAC
CGTGGCGTAAAGCCTGTTTTCAGCATTGGGGATGAAGAAGAATACGACACAGATGAAATTGACA
GTTCTTCAATGTCAGATGATGATAGAAAAGAGGTTGTAAACATTCAGACTTGGATAAACAAGCC
AGATGTCAAACATCATTTTCCTTGTAAAGAAGTAAAAGAAAGTGGACACATGTTTCCCAGTCAT
CTGTTGGTTACTGCAACACATATGTACTGTTTAAGGGAGATTGTTTCACGGAAAGGATTGGCTT
ATATACAGTCTCGACAAGCGCTGAATTCTGTAGTTAAAATTACATCCAAAAAAAAACATCCTGA
ACTCATTACCTTCAAGTATGGAAATAGCAGTGCTTCAGGAATAGAAATCTTGGCAATCGAAAGG
TATTTGATTCCAAATGCAGGGGATGCAACTAAAGCCATAAAACAGCAGATCATGAAAGTTTTGG
ATGCTTTGGAAAGTTAATATAAAAGAAAATTATATAAAAAGAAATTAAGACAACCAAGAGAAAC
ATGGACATATACCTCCTGACTGAATACTAACTGGAGACCTTTCATTTGCTCATGGGGCTGCTTA
AATAGCAGGTCTAAGAAAGTGTAAATTATTATAATCAATCTGTGGACAGTAAACTTTTTAAAAA
TTTTTCTTTTGCATTTTGGTTTTATAAAATGATGTATTATAAAGGTCAGTTATTAAATTACTTT
GAAGTAACTGACCCTGTGCCCTTATGGACTAAGTAAGGGTACAGAATGCAGTTCTGTTTTGAAG
AGCTGTTTTAAGGGAACATGCATCACTTTCGGGTTCAAAAACAACTGTACACATACATATCTGC
AGTGTCTTCACTGAAAATTAGAGATAGAATTAGTTGAAGAGACTTCCTTAATTGCTACATTGTT
TTACTCACTGAGCAATATCAGAAACTAAAAACTTAGGTTAATAATTCACTCACTGTTTCTATTC
TTCTTAAAAAGAGTGAAATTTTTTTAATGGAATGGTTGAAGATTCCTGCCAACTCAAAATACAG
TACAGCTAGTAAAATGTTGAAACATCAGTTTCTAAATCACCTTTGCTCCAATAGCTAATTTTTT
GGACACTAAATGCTTCAAAGATAAGAAACTTCATCCTAATGATTTCTAAAGAGCAGTTAAAAGC
ATTAAAATAAGTAGGTAGGCTGTTAAGATTAAAATTAACATTTTGGGGACAGAATTGTGTCTGT
AAAAATGTCATTGGTTTTTATTACAAGTGGATTATTTTATTCATATTTTAAAACAAGTGTTTAA
GCCACATTGATTTATCCTCATTGAGGATTATGGTCTGTAACCACAGTAATATCCACTTATATAA
ATGCCAAATAATCAGAGAGCTTATAAAGTACAATTGTTTTTGTCATCATTTTCTGAAGTTCTTT
CTCTTCTTTTGGTTTTGTCCTCTCATTGAAGTTCCAGTGGTTTGAAATTAGTTTTGGACACATT
GTCTTAATGTACTGAAAATGGCTCTGCTGTATTTTGCAGCGTTTTTCATTTAATTTATAATGGT
CCATATTAGACACATTTGGTAAGAGAAGTCCAGGAACACATTTAGGGCTATGGAATAATATTTT
GTAAAATCCATTTGGGAAGTTGCAATACCCACAATCTGACATGTCCTAAAATGTAAGGGATTAT
CTCTAAGGGGTTGATGGGAGAAATATTTAGATGTACCCTGTTAACGGCCAGTCATTTTGATTTA
CTTATGGAAATCAAGTGAATAAAAGGCAACATAATTTGGGAAATTTTATTCTAATATCTAATAA
AAACAGTTTGAGTGGTTGAAGACATCTGCATGAAATTGCACCTGGGTGTATTACTTGATACAAC
TCTCCCCTAAAACTGTTGTAATTGCATTTTTTCCCTTTTCTTGGCACCCCTTTAGAAATGTACT
GAAGTCTCATTTTTCACCCATTTCAGCCATGGGACATTTTTCATAATATTAATGTAAAGATGTT
TGTGTTACTGTTTATAAATTACAATTGTAAATAAATTAATAGTTTGCCCAAAACTTTGTTCTTA
AA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008973643	(Get FASTA)	NCBI Sequence Viewer
	XP_008973644	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000031083.1
	ENSPPAP00000031086.1
	ENSPPAP00000031090.1
	ENSPPAP00000031092.1
	ENSPPAP00000031098.1
	ENSPPAP00000031102.1
	ENSPPAP00000031104.1

RefSeq Acc Id:	XP_008973643 ⟸ XM_008975395
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BN40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGEDVPPLPTASGDGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNVAGKG DSLASWDGILDLPEQNTIHKDCLRFIDQLSVPEEKAAELLLDIESVITFYCKSRNIKYSTSLSW IHLLKPLVHLQLPRSDLYNCFYAIMNKYIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKIT PDSYALNWLGSLFACYCSIEVTQAIWDGYLQQADPFFIYFLMLIILVNAKEVILTQESDSKEEV IQFLENTPSSLNIEDIEDLFSLAQYYCSKTPASFRKDNHHLFGSTLLGIKDDDADLSQALCLAI SVSEILQANQLQGEGVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNPSEFAQSVKSLLEAQK QSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFLQKNKEYVSIASGGFMALQQHLADINVDG PENGYGHWIASTSGSRSSINSVDGESPNGSSDRGMKSLVNKMTVALKTKSVNVREKVISFIENT STPVDRMSFNLPWPDRSCTERHVSSSDRVGKPYRGVKPVFSIGDEEEYDTDEIDSSSMSDDDRK EVVNIQTWINKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCLREIVSRKGLAYIQSRQALNS VVKITSKKKHPELITFKYGNSSASGIEILAIERYLIPNAGDATKAIKQQIMKVLDALES hide sequence

RefSeq Acc Id:	XP_008973644 ⟸ XM_008975396
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BX61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGEDVPPLPTASGDGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNVAGKG DSLASWDGILDLPEQNTIHKDCLRFIDQLSVPEEKAAELLLDIESVITFYCKSRNIKYSTSLSW IHLLKPLVHLQLPRSDLYNCFYAIMNKYIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKIT PDSYALNWLGSLFACYCSIEVTQAIWDGYLQQADPFFIYFLMLIILVNAKEVILTQESDSKEEV IQFLENTPSSLNIEDIEDLFSLAQYYCSKTPASFRKDNHHLFGSTLLGIKDDDADLSQALCLAI SVSEILQANQLQGEGVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNPSEFAQSVKSLLEAQK QSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFLQKNKEYVSIASGGFMALQQHLADINVDG PENGYGHWIASTSGSRSSINSVDGESPNGSSDRGMKSLVNKMTVALKTKSVNVREKVISFIENT STPVDRHVSSSDRVGKPYRGVKPVFSIGDEEEYDTDEIDSSSMSDDDRKEVVNIQTWINKPDVK HHFPCKEVKESGHMFPSHLLVTATHMYCLREIVSRKGLAYIQSRQALNSVVKITSKKKHPELIT FKYGNSSASGIEILAIERYLIPNAGDATKAIKQQIMKVLDALES hide sequence

Ensembl Acc Id:

ENSPPAP00000031086 ⟸ ENSPPAT00000053950

Ensembl Acc Id:

ENSPPAP00000031090 ⟸ ENSPPAT00000053954

Ensembl Acc Id:

ENSPPAP00000031092 ⟸ ENSPPAT00000053956

Ensembl Acc Id:

ENSPPAP00000031083 ⟸ ENSPPAT00000053947

Ensembl Acc Id:

ENSPPAP00000031098 ⟸ ENSPPAT00000053962

Ensembl Acc Id:

ENSPPAP00000031102 ⟸ ENSPPAT00000053966

Ensembl Acc Id:

ENSPPAP00000031104 ⟸ ENSPPAT00000053968

Protein Domains

Rab-GAP TBC Rhodanese

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038361	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000053947.1	UniProtKB/TrEMBL
	ENSPPAT00000053950.1	UniProtKB/TrEMBL
	ENSPPAT00000053954.1	UniProtKB/TrEMBL
	ENSPPAT00000053956.1	UniProtKB/TrEMBL
	ENSPPAT00000053962.1	UniProtKB/TrEMBL
	ENSPPAT00000053966.1	UniProtKB/TrEMBL
	ENSPPAT00000053968.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.250.10	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	Rab-GTPase-TBC_dom	UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	Rhodanese-like_dom	UniProtKB/TrEMBL
	Rhodanese-like_dom_sf	UniProtKB/TrEMBL
	TBC1D23	UniProtKB/TrEMBL
	TBC1D23_C	UniProtKB/TrEMBL
NCBI Gene	TBC1D23	ENTREZGENE
PANTHER	PTHR13297	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER 23	UniProtKB/TrEMBL
Pfam	RabGAP-TBC	UniProtKB/TrEMBL
	Rhodanese	UniProtKB/TrEMBL
	TBC1D23_C	UniProtKB/TrEMBL
PROSITE	RHODANESE_3	UniProtKB/TrEMBL
	TBC_RABGAP	UniProtKB/TrEMBL
SMART	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47923	UniProtKB/TrEMBL
	SSF52821	UniProtKB/TrEMBL
UniProt	A0A2R9BN40	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BN61_PANPA	UniProtKB/TrEMBL
	A0A2R9BNY1_PANPA	UniProtKB/TrEMBL
	A0A2R9BRM7_PANPA	UniProtKB/TrEMBL
	A0A2R9BRP3_PANPA	UniProtKB/TrEMBL
	A0A2R9BX61	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BX72_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM