TMEM176A (transmembrane protein 176A) - Rat Genome Database

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Gene: TMEM176A (transmembrane protein 176A) Pan paniscus
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Symbol: TMEM176A
Name: transmembrane protein 176A
RGD ID: 11731279
Description: INVOLVED IN negative regulation of dendritic cell differentiation (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,216,094 - 187,220,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,226,358 - 39,230,767 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,383,001 - 142,387,407 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,535,019 - 154,539,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,535,019 - 154,539,613 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM176A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,216,094 - 187,220,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,226,358 - 39,230,767 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,383,001 - 142,387,407 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,535,019 - 154,539,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,535,019 - 154,539,613 (+)Ensemblpanpan1.1panPan2
TMEM176A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387150,800,769 - 150,805,118 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7150,800,403 - 150,805,118 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,497,857 - 150,502,206 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,128,787 - 150,133,141 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,054,882 - 145,059,236 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,309,934 - 144,314,288 (+)NCBIHuRef
CHM1_17150,506,066 - 150,510,420 (+)NCBICHM1_1
T2T-CHM13v2.07151,973,144 - 151,977,889 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27149,827,144 - 149,831,498 (+)NCBI
Tmem176a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,818,417 - 48,822,298 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,817,853 - 48,824,005 (+)EnsemblGRCm39 Ensembl
GRCm38648,841,483 - 48,845,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,840,919 - 48,847,071 (+)EnsemblGRCm38mm10GRCm38
MGSCv37648,791,482 - 48,795,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36648,771,108 - 48,776,634 (+)NCBIMGSCv36mm8
Celera649,351,236 - 49,355,117 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.75NCBI
Tmem176a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8479,101,946 - 79,109,499 (+)NCBIGRCr8
mRatBN7.2477,774,940 - 77,778,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,774,843 - 77,778,620 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,982,347 - 82,986,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0478,757,819 - 78,761,499 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0477,198,109 - 77,201,789 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,458,735 - 78,462,415 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,458,625 - 78,462,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04143,146,378 - 143,150,058 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,919,918 - 76,923,598 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1477,195,665 - 77,200,002 (+)NCBI
Celera472,712,007 - 72,715,688 (+)NCBICelera
Cytogenetic Map4q24NCBI
Tmem176a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,209,923 - 5,213,251 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,209,426 - 5,213,194 (+)NCBIChiLan1.0ChiLan1.0
TMEM176A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,927,031 - 14,931,350 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,926,805 - 14,931,238 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,535,289 - 15,539,607 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,642,520 - 16,646,838 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11615,021,512 - 15,025,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,603,025 - 15,607,343 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,653,561 - 15,657,879 (+)NCBIUU_Cfam_GSD_1.0
Tmem176a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,632,165 - 6,636,335 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,267,877 - 6,271,290 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,267,135 - 6,271,275 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM176A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,337,837 - 6,342,555 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,337,835 - 6,342,603 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,647,757 - 6,650,861 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM176A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121118,992,217 - 118,996,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21118,991,363 - 118,996,471 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607214,964,082 - 14,968,398 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem176a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,821,826 - 5,833,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,822,702 - 5,833,752 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000015963   ⟹   ENSPPAP00000003459
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7154,535,019 - 154,539,613 (+)Ensembl
RefSeq Acc Id: XM_003815055   ⟹   XP_003815103
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26187,216,094 - 187,220,502 (+)NCBI
NHGRI_mPanPan1739,226,358 - 39,230,767 (+)NCBI
Mhudiblu_PPA_v07142,383,001 - 142,387,407 (+)NCBI
PanPan1.17154,535,050 - 154,539,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003815056   ⟹   XP_003815104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26187,216,184 - 187,220,502 (+)NCBI
NHGRI_mPanPan1739,226,440 - 39,230,767 (+)NCBI
Mhudiblu_PPA_v07142,383,075 - 142,387,407 (+)NCBI
PanPan1.17154,535,019 - 154,539,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008967936   ⟹   XP_008966184
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26187,216,184 - 187,220,502 (+)NCBI
NHGRI_mPanPan1739,226,440 - 39,230,767 (+)NCBI
Mhudiblu_PPA_v07142,383,075 - 142,387,407 (+)NCBI
PanPan1.17154,535,019 - 154,539,613 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003815103 (Get FASTA)   NCBI Sequence Viewer  
  XP_003815104 (Get FASTA)   NCBI Sequence Viewer  
  XP_008966184 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003459
  ENSPPAP00000003459.1
RefSeq Acc Id: XP_008966184   ⟸   XM_008967936
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZF28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003815104   ⟸   XM_003815056
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZF28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003815103   ⟸   XM_003815055
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZF28 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000003459   ⟸   ENSPPAT00000015963


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000014592 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000015963.1 UniProtKB/TrEMBL
InterPro CD20-like UniProtKB/TrEMBL
  TMEM176A/TMEM176B UniProtKB/TrEMBL
NCBI Gene TMEM176A ENTREZGENE
PANTHER PTHR15756 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 176A UniProtKB/TrEMBL
Pfam CD20 UniProtKB/TrEMBL
UniProt A0A2R8ZF28 ENTREZGENE, UniProtKB/TrEMBL