PTPRCAP (protein tyrosine phosphatase receptor type C associated protein) - Rat Genome Database

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Gene: PTPRCAP (protein tyrosine phosphatase receptor type C associated protein) Pan paniscus
Analyze
Symbol: PTPRCAP
Name: protein tyrosine phosphatase receptor type C associated protein
RGD ID: 11714876
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,662,456 - 68,664,839 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,705,047 - 69,707,430 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,793,934 - 62,796,321 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,106,069 - 66,108,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,106,069 - 66,108,527 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PTPRCAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,662,456 - 68,664,839 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,705,047 - 69,707,430 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,793,934 - 62,796,321 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,106,069 - 66,108,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,106,069 - 66,108,527 (-)Ensemblpanpan1.1panPan2
PTPRCAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,435,510 - 67,437,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,435,510 - 67,437,682 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,202,981 - 67,205,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,959,557 - 66,961,729 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,959,556 - 66,961,729NCBI
Celera1164,536,095 - 64,538,351 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1163,531,031 - 63,533,330 (-)NCBIHuRef
CHM1_11167,086,051 - 67,088,223 (-)NCBICHM1_1
T2T-CHM13v2.01167,429,626 - 67,431,798 (-)NCBIT2T-CHM13v2.0
Ptprcap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,204,645 - 4,206,709 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,203,603 - 4,206,750 (+)EnsemblGRCm39 Ensembl
GRCm38194,154,646 - 4,156,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,153,604 - 4,156,751 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,154,646 - 4,156,710 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,154,646 - 4,156,710 (+)NCBIMGSCv36mm8
Celera194,025,785 - 4,027,849 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.86NCBI
Ptprcap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,878,593 - 210,880,752 (+)NCBIGRCr8
mRatBN7.21201,449,133 - 201,451,293 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,449,113 - 201,451,288 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,801,363 - 209,803,527 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,894,593 - 216,896,754 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,585,606 - 209,587,770 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,403,970 - 219,406,129 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,403,970 - 219,406,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,274,621 - 226,276,780 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,738,735 - 206,740,894 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1198,993,497 - 198,995,656 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ptprcap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,042,894 - 18,043,448 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,041,094 - 18,043,687 (+)NCBIChiLan1.0ChiLan1.0
PTPRCAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,031,740 - 50,034,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,027,275 - 50,050,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,642,368 - 48,644,622 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,954,072 - 50,956,326 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,948,563 - 50,956,322 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,167,394 - 50,169,648 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,741,885 - 49,744,139 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,536,400 - 50,538,654 (+)NCBIUU_Cfam_GSD_1.0
Ptprcap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,870,273 - 5,872,704 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,312,896 - 2,315,028 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,312,570 - 2,315,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRCAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,087,256 - 5,089,359 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,087,203 - 5,089,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,804,923 - 3,807,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRCAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,825,821 - 6,828,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038104,110,890 - 104,113,382 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprcap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,087,197 - 19,089,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000066009   ⟹   ENSPPAP00000043075
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1166,106,069 - 66,108,527 (-)Ensembl
RefSeq Acc Id: XM_003828729   ⟹   XP_003828777
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,662,456 - 68,664,839 (-)NCBI
NHGRI_mPanPan11169,705,047 - 69,707,430 (-)NCBI
Mhudiblu_PPA_v01162,793,934 - 62,796,321 (-)NCBI
PanPan1.11166,106,069 - 66,108,527 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008954165   ⟹   XP_008952413
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,662,456 - 68,664,839 (-)NCBI
NHGRI_mPanPan11169,705,047 - 69,707,430 (-)NCBI
Mhudiblu_PPA_v01162,793,938 - 62,796,321 (-)NCBI
PanPan1.11166,106,069 - 66,108,527 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828777 (Get FASTA)   NCBI Sequence Viewer  
  XP_008952413 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000043075.1
RefSeq Acc Id: XP_003828777   ⟸   XM_003828729
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008952413   ⟸   XM_008954165
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CM53 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000043075   ⟸   ENSPPAT00000066009


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000044074 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000066009.1 UniProtKB/TrEMBL
InterPro PTPRCAP UniProtKB/TrEMBL
NCBI Gene PTPRCAP ENTREZGENE
PANTHER PROTEIN TYROSINE PHOSPHATASE RECEPTOR TYPE C-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  PTHR15312 UniProtKB/TrEMBL
Pfam PTPRCAP UniProtKB/TrEMBL
PIRSF PTPRC-associated_protein UniProtKB/TrEMBL
UniProt A0A2R9CM53 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTPRCAP  protein tyrosine phosphatase receptor type C associated protein    protein tyrosine phosphatase, receptor type C associated protein  Symbol and/or name change 5135510 APPROVED