LOC106634670 (small ribosomal subunit protein eS27-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC106634670 (small ribosomal subunit protein eS27-like) Pan paniscus
Analyze
Symbol: LOC106634670
Name: small ribosomal subunit protein eS27-like
RGD ID: 11712775
Description: ENCODES a protein that exhibits metal ion binding (inferred); RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN ribosomal small subunit assembly (inferred); translation (inferred); FOUND IN cytoplasm (inferred); cytosolic small ribosomal subunit (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S27-like
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2322,848,992 - 22,849,381 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1423,045,562 - 23,046,037 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0417,002,793 - 17,003,287 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1422,293,288 - 22,293,573 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014344587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_014344587   ⟹   XP_014200073
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2322,848,992 - 22,849,381 (+)NCBI
NHGRI_mPanPan1423,045,562 - 23,046,037 (+)NCBI
Mhudiblu_PPA_v0417,002,793 - 17,003,287 (+)NCBI
PanPan1.1422,293,288 - 22,293,573 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_014200073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002706
  ENSPPAP00000002706.1
Reference Protein Sequences
RefSeq Acc Id: XP_014200073   ⟸   XM_014344587
- UniProtKB: A0A2R8ZCC0 (UniProtKB/TrEMBL),   A0A2R8Z624 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011801 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000012849.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.100 UniProtKB/TrEMBL
InterPro Ribosomal_S27 UniProtKB/TrEMBL
  Ribosomal_S27_Zn-bd_dom_sf UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
KEGG Report pps:106634670 UniProtKB/TrEMBL
NCBI Gene LOC106634670 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S27 UniProtKB/TrEMBL
  PTHR11594 UniProtKB/TrEMBL
Pfam Ribosomal_S27e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S27E UniProtKB/TrEMBL
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0A2R8Z624 ENTREZGENE
  A0A2R8ZCC0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC106634670  small ribosomal subunit protein eS27-like  LOC106634670  40S ribosomal protein S27-like  Symbol and/or name change 5135510 APPROVED