ICAM5 (intercellular adhesion molecule 5) - Rat Genome Database

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Gene: ICAM5 (intercellular adhesion molecule 5) Pan paniscus
Analyze
Symbol: ICAM5
Name: intercellular adhesion molecule 5
RGD ID: 11697077
Description: ENCODES a protein that exhibits integrin binding (inferred); INVOLVED IN phagocytosis (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,206,390 - 15,213,763 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,205,008 - 14,212,378 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,839,821 - 9,847,198 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,502,185 - 10,511,936 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,504,037 - 10,511,716 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ICAM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,206,390 - 15,213,763 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,205,008 - 14,212,378 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,839,821 - 9,847,198 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,502,185 - 10,511,936 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,504,037 - 10,511,716 (+)Ensemblpanpan1.1panPan2
ICAM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,289,952 - 10,296,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,289,952 - 10,296,778 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,400,628 - 10,407,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,261,655 - 10,268,453 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,261,654 - 10,268,453NCBI
Celera1910,296,051 - 10,302,851 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef199,980,634 - 9,987,434 (+)NCBIHuRef
CHM1_11910,400,920 - 10,407,719 (+)NCBICHM1_1
T2T-CHM13v2.01910,415,547 - 10,422,890 (+)NCBIT2T-CHM13v2.0
Icam5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,943,372 - 20,950,331 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,943,369 - 20,950,332 (+)EnsemblGRCm39 Ensembl
GRCm38921,032,038 - 21,039,036 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,032,073 - 21,039,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv37920,836,482 - 20,843,480 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36920,782,492 - 20,789,438 (+)NCBIMGSCv36mm8
Celera918,300,624 - 18,307,622 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.7NCBI
Icam5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,843,563 - 27,851,767 (+)NCBIGRCr8
mRatBN7.2819,567,390 - 19,575,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,568,600 - 19,575,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,588,020 - 23,595,010 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,885,879 - 21,892,869 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,798,267 - 19,805,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,050,222 - 22,057,209 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,050,222 - 22,057,209 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,107,090 - 22,114,077 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,055,255 - 20,062,100 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,052,605 - 20,062,100 (+)NCBI
Celera820,963,025 - 20,970,012 (+)NCBICelera
Cytogenetic Map8q13NCBI
Icam5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,575,669 - 1,583,910 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,575,669 - 1,583,904 (+)NCBIChiLan1.0ChiLan1.0
ICAM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,809,065 - 50,816,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,802,151 - 50,815,621 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,678,819 - 50,685,773 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,330,697 - 51,337,648 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,330,683 - 51,337,798 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,536,837 - 50,543,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,965,597 - 50,972,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,206,727 - 51,213,680 (-)NCBIUU_Cfam_GSD_1.0
Icam5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,718,119 - 209,724,658 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659630,235 - 636,425 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659630,177 - 636,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ICAM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,111,309 - 69,118,164 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,111,223 - 69,118,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,445,639 - 69,452,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ICAM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,341,012 - 9,348,284 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,341,960 - 9,348,284 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,692,764 - 10,700,078 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Icam5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,454,753 - 2,461,732 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,454,771 - 2,461,732 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034946172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000038099   ⟹   ENSPPAP00000015409
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1910,504,037 - 10,511,716 (+)Ensembl
RefSeq Acc Id: XM_034946172   ⟹   XP_034802063
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22015,206,390 - 15,213,763 (+)NCBI
NHGRI_mPanPan11914,205,008 - 14,212,378 (+)NCBI
Mhudiblu_PPA_v0199,839,821 - 9,847,198 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034802063 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000015409.1
RefSeq Acc Id: XP_034802063   ⟸   XM_034946172
- UniProtKB: A0A2R9AIJ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000015409   ⟸   ENSPPAT00000038099
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030844 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038099.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro ICAM UniProtKB/TrEMBL
  ICAM1_3_5_D2 UniProtKB/TrEMBL
  ICAM_N UniProtKB/TrEMBL
  ICAM_VCAM UniProtKB/TrEMBL
  ICAM_VCAM_N UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene ICAM5 ENTREZGENE
PANTHER INTERCELLULAR ADHESION MOLECULE UniProtKB/TrEMBL
  INTERCELLULAR ADHESION MOLECULE 5 UniProtKB/TrEMBL
Pfam ICAM1_3_5_D2 UniProtKB/TrEMBL
  ICAM_N UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PRINTS ICAM UniProtKB/TrEMBL
  ICAMVCAM1 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9AIJ1 ENTREZGENE, UniProtKB/TrEMBL