RBM33 (RNA binding motif protein 33) - Rat Genome Database

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Gene: RBM33 (RNA binding motif protein 33) Pan paniscus
Analyze
Symbol: RBM33
Name: RNA binding motif protein 33
RGD ID: 11694075
Description: ENCODES a protein that exhibits lncRNA binding (inferred); N6-methyladenosine-containing RNA reader activity (inferred); protein-macromolecule adaptor activity (inferred); INVOLVED IN regulation of mRNA stability (inferred); RNA export from nucleus (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); holoprosencephaly 3 (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 33
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26192,070,461 - 192,207,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07147,244,030 - 147,380,702 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,958,088 - 159,095,567 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,958,099 - 159,089,137 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26192,070,461 - 192,207,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07147,244,030 - 147,380,702 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,958,088 - 159,095,567 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,958,099 - 159,089,137 (+)Ensemblpanpan1.1panPan2
RBM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387155,644,661 - 155,781,480 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7155,644,451 - 155,781,485 (+)EnsemblGRCh38hg38GRCh38
GRCh377155,437,355 - 155,574,174 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367155,129,964 - 155,266,940 (+)NCBINCBI36Build 36hg18NCBI36
Celera7149,860,791 - 149,997,767 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7149,167,185 - 149,304,126 (+)NCBIHuRef
CHM1_17155,445,551 - 155,582,574 (+)NCBICHM1_1
T2T-CHM13v2.07156,825,729 - 156,962,514 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27154,668,779 - 154,805,751 (+)NCBI
Rbm33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39528,521,817 - 28,624,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl528,522,119 - 28,624,237 (+)EnsemblGRCm39 Ensembl
GRCm38528,316,836 - 28,419,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl528,317,121 - 28,419,239 (+)EnsemblGRCm38mm10GRCm38
MGSCv37528,643,729 - 28,745,782 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36528,647,964 - 28,750,033 (+)NCBIMGSCv36mm8
Celera525,865,900 - 25,968,317 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.36NCBI
Rbm33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr847,714,660 - 7,825,469 (-)NCBIGRCr8
mRatBN7.246,980,807 - 7,088,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl46,983,970 - 7,089,918 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx411,994,925 - 12,095,393 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.047,809,141 - 7,909,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,155,356 - 6,255,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04592,616 - 700,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4848,551 - 870,720 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4594,882 - 695,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04586,955 - 693,781 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04839,542 - 862,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.442,232,812 - 2,333,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.142,211,733 - 2,333,323 (-)NCBI
Celera43,192,882 - 3,293,382 (+)NCBICelera
Cytogenetic Map4q11NCBI
Rbm33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,197 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBIChiLan1.0ChiLan1.0
RBM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11618,489,646 - 18,634,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1618,489,214 - 18,629,302 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1619,122,926 - 19,263,960 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01620,219,274 - 20,360,396 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1620,218,481 - 20,360,396 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11618,589,677 - 18,730,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01619,169,753 - 19,310,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01619,223,245 - 19,364,329 (+)NCBIUU_Cfam_GSD_1.0
Rbm33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051182,886,375 - 2,976,095 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365279,936,317 - 10,011,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365279,936,094 - 10,017,054 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1182,564,990 - 2,676,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,683,355 - 2,795,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121123,776,993 - 123,906,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21123,776,858 - 123,904,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607219,980,169 - 20,114,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,234,265 - 2,340,693 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248002,228,579 - 2,340,903 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000059917   ⟹   ENSPPAP00000037021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7158,958,099 - 159,089,137 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059930   ⟹   ENSPPAP00000037034
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7158,958,467 - 159,014,150 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059933   ⟹   ENSPPAP00000037037
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7158,976,764 - 159,089,137 (+)Ensembl
RefSeq Acc Id: XM_003816348   ⟹   XP_003816396
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,481 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,669 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,048 - 147,380,702 (+)NCBI
PanPan1.17158,958,088 - 159,095,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969421   ⟹   XP_008967669
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,487 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,153 - 147,380,702 (+)NCBI
PanPan1.17158,958,088 - 159,095,567 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969422   ⟹   XP_008967670
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,487 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,654 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,153 - 147,380,702 (+)NCBI
PanPan1.17158,958,088 - 159,095,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969424   ⟹   XP_008967672
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,487 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,153 - 147,380,702 (+)NCBI
PanPan1.17158,958,088 - 159,095,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969425   ⟹   XP_008967673
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,469 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,669 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,153 - 147,380,702 (+)NCBI
PanPan1.17158,958,088 - 159,095,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969426   ⟹   XP_008967674
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,481 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,671 - 44,217,727 (+)NCBI
Mhudiblu_PPA_v07147,244,030 - 147,380,702 (+)NCBI
PanPan1.17158,958,099 - 159,095,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055115555   ⟹   XP_054971530
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,461 - 192,207,461 (+)NCBI
NHGRI_mPanPan1744,080,671 - 44,217,727 (+)NCBI
RefSeq Acc Id: XM_063606433   ⟹   XP_063462503
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26192,070,487 - 192,192,744 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008967669   ⟸   XM_008969421
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967670   ⟸   XM_008969422
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967672   ⟸   XM_008969424
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967673   ⟸   XM_008969425
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003816396   ⟸   XM_003816348
- Peptide Label: isoform X7
- UniProtKB: A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967674   ⟸   XM_008969426
- Peptide Label: isoform X8
- UniProtKB: A0A2R9C524 (UniProtKB/TrEMBL),   A0A2R9CFM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000037021   ⟸   ENSPPAT00000059917
RefSeq Acc Id: ENSPPAP00000037037   ⟸   ENSPPAT00000059933
RefSeq Acc Id: ENSPPAP00000037034   ⟸   ENSPPAT00000059930
RefSeq Acc Id: XP_054971530   ⟸   XM_055115555
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063462503   ⟸   XM_063606433
- Peptide Label: isoform X4
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041249 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059917.1 UniProtKB/TrEMBL
  ENSPPAT00000059930.1 UniProtKB/TrEMBL
  ENSPPAT00000059933.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM33 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene RBM33 ENTREZGENE
PANTHER PTHR22014 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 33 UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R9C524 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C5D2_PANPA UniProtKB/TrEMBL
  A0A2R9CFM2 ENTREZGENE, UniProtKB/TrEMBL