Rbm33 (RNA binding motif protein 33) - Rat Genome Database

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Gene: Rbm33 (RNA binding motif protein 33) Chinchilla lanigera
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Symbol: Rbm33
Name: RNA binding motif protein 33
RGD ID: 8873850
Description: ENCODES a protein that exhibits lncRNA binding (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN regulation of mRNA stability (ortholog); RNA export from nucleus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 33
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,197 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rbm33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,197 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBIChiLan1.0ChiLan1.0
RBM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387155,644,661 - 155,781,480 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7155,644,451 - 155,781,485 (+)EnsemblGRCh38hg38GRCh38
GRCh377155,437,355 - 155,574,174 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367155,129,964 - 155,266,940 (+)NCBINCBI36Build 36hg18NCBI36
Celera7149,860,791 - 149,997,767 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7149,167,185 - 149,304,126 (+)NCBIHuRef
CHM1_17155,445,551 - 155,582,574 (+)NCBICHM1_1
T2T-CHM13v2.07156,825,729 - 156,962,514 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27154,668,779 - 154,805,751 (+)NCBI
Rbm33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39528,521,817 - 28,624,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl528,522,119 - 28,624,237 (+)EnsemblGRCm39 Ensembl
GRCm38528,316,836 - 28,419,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl528,317,121 - 28,419,239 (+)EnsemblGRCm38mm10GRCm38
MGSCv37528,643,729 - 28,745,782 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36528,647,964 - 28,750,033 (+)NCBIMGSCv36mm8
Celera525,865,900 - 25,968,317 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.36NCBI
Rbm33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr847,714,660 - 7,825,469 (-)NCBIGRCr8
mRatBN7.246,980,807 - 7,088,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl46,983,970 - 7,089,918 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx411,994,925 - 12,095,393 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.047,809,141 - 7,909,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,155,356 - 6,255,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04592,616 - 700,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4848,551 - 870,720 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4594,882 - 695,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04586,955 - 693,781 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04839,542 - 862,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.442,232,812 - 2,333,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.142,211,733 - 2,333,323 (-)NCBI
Celera43,192,882 - 3,293,382 (+)NCBICelera
Cytogenetic Map4q11NCBI
RBM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26192,070,461 - 192,207,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1744,080,652 - 44,217,727 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07147,244,030 - 147,380,702 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,958,088 - 159,095,567 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,958,099 - 159,089,137 (+)Ensemblpanpan1.1panPan2
RBM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11618,489,646 - 18,634,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1618,489,214 - 18,629,302 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1619,122,926 - 19,263,960 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01620,219,274 - 20,360,396 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1620,218,481 - 20,360,396 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11618,589,677 - 18,730,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01619,169,753 - 19,310,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01619,223,245 - 19,364,329 (+)NCBIUU_Cfam_GSD_1.0
Rbm33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051182,886,375 - 2,976,095 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365279,936,317 - 10,011,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365279,936,094 - 10,017,054 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1182,564,990 - 2,676,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,683,355 - 2,795,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121123,776,993 - 123,906,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21123,776,858 - 123,904,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607219,980,169 - 20,114,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,234,265 - 2,340,693 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248002,228,579 - 2,340,903 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001628   ⟹   ENSCLAP00000001585
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,134 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001629   ⟹   ENSCLAP00000001586
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,628,134 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001630   ⟹   ENSCLAP00000001587
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554918,539,605 - 8,572,108 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001631   ⟹   ENSCLAP00000001588
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554918,624,362 - 8,628,197 (+)Ensembl
RefSeq Acc Id: XM_005404864   ⟹   XP_005404921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404865   ⟹   XP_005404922
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404866   ⟹   XP_005404923
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404868   ⟹   XP_005404925
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504634   ⟹   XP_013360088
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554918,534,093 - 8,633,838 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005404921   ⟸   XM_005404864
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UJS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404922   ⟸   XM_005404865
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UJS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404925   ⟸   XM_005404868
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UJS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404923   ⟸   XM_005404866
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UMI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360088   ⟸   XM_013504634
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UMI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001588   ⟸   ENSCLAT00000001631
Ensembl Acc Id: ENSCLAP00000001587   ⟸   ENSCLAT00000001630
Ensembl Acc Id: ENSCLAP00000001585   ⟸   ENSCLAT00000001628
Ensembl Acc Id: ENSCLAP00000001586   ⟸   ENSCLAT00000001629
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001190 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001628 ENTREZGENE
  ENSCLAT00000001628.1 UniProtKB/TrEMBL
  ENSCLAT00000001629 ENTREZGENE
  ENSCLAT00000001629.1 UniProtKB/TrEMBL
  ENSCLAT00000001630.1 UniProtKB/TrEMBL
  ENSCLAT00000001631.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM33 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbm33 ENTREZGENE
PANTHER PTHR22014 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 33 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2UJS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULQ0_CHILA UniProtKB/TrEMBL
  A0A8C2UMI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UPU1_CHILA UniProtKB/TrEMBL