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Gene: CDH6 (cadherin 6) Pan paniscus

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Symbol:

CDH6

Name:

cadherin 6

RGD ID:

11691514

Description:

ENCODES a protein that exhibits beta-catenin binding (inferred); cadherin binding (inferred); calcium ion binding (inferred); INVOLVED IN female gonad development (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH Cachexia (ortholog); clear cell renal cell carcinoma (ortholog); Familial Pancreatic Carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cadherin-6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH6 (cadherin 6)	NCBI	Ortholog
Mus musculus (house mouse):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdh6 (cadherin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	78,986,650 - 79,126,446 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	77,140,291 - 77,280,100 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	79,013,970 - 79,152,645 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	84,398,468 - 84,529,567 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	84,398,474 - 84,456,013 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cachexia (ISO)

clear cell renal cell carcinoma (ISO)

Familial Pancreatic Carcinoma (ISO)

lung cancer (ISO)

melanoma (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

uterine corpus endometrial carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IEA)

calcium-dependent cell-cell adhesion (IEA)

cell adhesion (IEA)

cell migration (IEA)

cell morphogenesis (IEA)

cell-cell adhesion (IEA)

cell-cell adhesion mediated by cadherin (IEA)

cell-cell junction assembly (IEA)

female gonad development (ISO)

homophilic cell-cell adhesion (IEA)

Notch signaling pathway (ISO)

synaptic membrane adhesion (IEA)

Cellular Component

adherens junction (IEA)

catenin complex (IEA)

cell junction (IEA)

glutamatergic synapse (ISO)

membrane (IEA)

plasma membrane (IEA)

synapse (ISO)

Molecular Function

beta-catenin binding (IEA)

cadherin binding (IEA)

calcium ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CDH6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	78,986,650 - 79,126,446 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	77,140,291 - 77,280,100 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	79,013,970 - 79,152,645 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	84,398,468 - 84,529,567 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	84,398,474 - 84,456,013 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

CDH6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	31,193,686 - 31,329,146 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	31,193,679 - 31,329,146 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	5	31,193,793 - 31,329,253 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	31,229,553 - 31,360,994 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	31,229,552 - 31,360,994	NCBI
Celera	5	31,074,550 - 31,205,743 (+)	NCBI		Celera
Cytogenetic Map	5	p13.3	NCBI
HuRef	5	31,162,140 - 31,297,610 (+)	NCBI		HuRef
CHM1_1	5	31,194,916 - 31,330,813 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	31,307,253 - 31,442,732 (+)	NCBI		T2T-CHM13v2.0

Cdh6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	13,028,785 - 13,176,493 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	13,028,787 - 13,174,004 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	13,028,699 - 13,176,407 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	13,028,701 - 13,173,675 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	15	12,963,955 - 13,103,394 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	12,978,925 - 13,036,602 (-)	NCBI		MGSCv36	mm8
Celera	15	12,808,206 - 12,945,380 (-)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	6.11	NCBI

Cdh6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	63,801,630 - 63,952,309 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	63,806,135 - 63,952,287 (-)	Ensembl				GRCr8
mRatBN7.2	2	62,079,139 - 62,225,298 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	62,079,137 - 62,225,228 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	69,209,415 - 69,355,815 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	67,332,120 - 67,478,319 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	62,333,575 - 62,479,976 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	64,029,097 - 64,175,134 (-)	NCBI
Lyon_Normotensive	2	64,084,280 - 64,230,335 (-)	NCBI
Lyon_Hypertensive	2	63,936,060 - 64,082,074 (-)	NCBI
F344_StmMcwi	2	63,755,271 - 63,901,313 (-)	NCBI
Rnor_6.0	2	63,100,723 - 63,246,618 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	63,101,739 - 63,166,509 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	2	81,448,794 - 81,594,432 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	62,547,961 - 62,703,034 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	56,475,456 - 56,620,253 (+)	NCBI		Celera
RGSC_v3.1	2	62,476,190 - 62,631,267 (-)	NCBI
Cytogenetic Map	2	q16	NCBI

Cdh6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	17,187,197 - 17,311,186 (+)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955426	17,187,191 - 17,316,730 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDH6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	75,950,999 - 75,999,250 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	75,950,999 - 75,961,779 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	75,581,781 - 75,637,173 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	76,509,374 - 76,565,038 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	76,514,925 - 76,565,306 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	76,203,034 - 76,258,370 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	76,332,328 - 76,387,656 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	76,860,858 - 76,916,322 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdh6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	1	239,910,336 - 240,034,319 (+)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024407213	221,968,561 - 222,092,145 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	9,283,459 - 9,334,722 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	9,280,194 - 9,403,320 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	17,531,892 - 17,660,079 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	16	17,531,862 - 17,660,081 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	18,351,336 - 18,480,953 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	4	63,258,336 - 63,393,940 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666071	20,688,543 - 20,828,480 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	4	30,457,589 - 30,594,066 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	30,457,718 - 30,592,105 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Cdh6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624759	23,160,049 - 23,305,922 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624759	23,166,122 - 23,305,898 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	16	2,399,678 - 2,540,587 (-)	Ensembl

Cdh6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	167,923,543 - 168,062,484 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008971846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034960236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034960237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063604530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063604531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000043701 ⟹ ENSPPAP00000020903

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	84,398,474 - 84,456,013 (-)	Ensembl

RefSeq Acc Id:

XM_008971846 ⟹ XP_008970094

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	78,989,868 - 79,126,100 (-)	NCBI
NHGRI_mPanPan1	5	77,148,048 - 77,280,097 (-)	NCBI
Mhudiblu_PPA_v0	5	79,021,034 - 79,152,293 (-)	NCBI
PanPan1.1	5	84,398,468 - 84,529,567 (-)	NCBI

Sequence:

show sequence

AGGACCGACGCCGTTTCCCGGGGAGCCTGGGCACCGCTCCTCCGACTCCTGATATCCTCTGAGA
GCCAAGCAAAGAACATTAAGGAAGGAAGGAGGAATGAGGCTGGATACGGTGCAGTGAAAAAGGC
ACTTCCAAGAGTGGGGCACTCACTACACAGAGACTCGACGGTGCCATCAGCATGAGAACTTACC
GCTACTTCTTGCTGCTCTTTTGGGTGGGCCAGCCCTACCCAACTCTCTCAACTCCACTATCAAA
GAGGACTAGTGGTTTCCCAGCAAAGAAAAGGGCCCTGGAGCTCTCTGGAAACAGCAAAAATGAG
CTGAACCGTTCAAAAAGGAGCTGGATGTGGAATCAGTTCTTTCTCCTGGAGGAATACACAGGAT
CCGATTATCAATATGTGGGCAAGTTACATTCAGACCAGGATAGAGGAGATGGATCACTTAAATA
TATCCTTTCAGGAGATGGAGCAGGAGATCTCTTCATTATTAATGAAAACACAGGCGACATACAG
GCCACCAAGAGGCTGGACAGGGAAGAAAAACCCGTTTACATCCTTCGAGCTCAAGCTATAAACA
GAAGGACAGGGAGACCCGTGGAGCCCGAGTCTGAATTCATCATCAAGATCCATGACATCAACGA
CAATGAACCAATATTCACCAAGGAGGTTTACACAGCCACTGTCCCTGAAATGTCTGATGTCGGT
ACATTTGTTGTCCAAGTCACTGCAACGGATGCAGATGATCCAACATATGGGAACAGTGCTAAAG
TTGTCTACAGTATTCTACAGGGACAGCCCTATTTTTCAGTTGAATCAGAAACAGGTATTATCAA
GACAGCTTTGCTCAACATGGATCGAGAAAACAGGGAGCAGTACCAAGTGGTGATTCAAGCCAAG
GATATGGGCGGCCAGATGGGAGGATTATCTGGGACCACCACCGTGAACATCACACTGACTGATG
TCAACGACAACCCTCCCCGATTCCCCCAGAGTACATACCAGTTTAAAACTCCTGAATCTTCTCC
ACCGGGGACACCAATTGGCAGAATCAAAGCCAGCGACGCTGATGTGGGAGAAAATGCTGAAATT
GAGTACAGCATCACAGACGGTGAGGGGCTGGATATGTTTGATGTCATCACCGACCAGGAAACCC
AGGAAGGGATTATAACTGTCAAAAAGCTCTTGGACTTTGAAAAGAAGAAAGTGTATACCCTTAA
AGTGGAAGCCTCCAATCCTCATGTTGAGCCACGATTTCTCTACCTGGGGCCTTTCAAAGATTCA
GCCACGGTTAGAATTGTGGTGGAGGATGTAGATGAGCCACCTGTCTTCAGCAAACTGGCCTACA
TCTTACAAATAAGAGAAGATGCTCAGATAAACACCACAATAGGCTCCGTCACAGCCCAAGATCC
AGATGCTGCCAGGAATCCTGTCAAGTACTCTGTAGATCGACACACAGATATGGACAGAATATTC
AACATTGATTCTGGAAATGGTTCAATTTTTACATCGAAACTTCTTGACCGAGAAACATTGCTAT
GGCACAACATTACAGTGATAGCAACAGAGATCAATAATCCAAAGCAAAGTAGTCGAGTACCTCT
ATATATTAAAGTTCTAGATGTCAATGACAACGCCCCAGAATTTGCTGAGTTCTATGAAACTTTT
GTCTGTGAAAAAGCAAAGGCAGATCAGTTGATTCAGACCCTGCATGCTGTTGACAAGGACGACC
CTTATAGTGGGCACCAATTTTCGTTTTCCTTGGCCCCTGAAGCAGCCAGTGGCTCAAACTTTAC
CATTCAAGACAACAAAGACAACACGGCGGGAATCTTAACTCGGAAAAATGGCTATAATAGACAC
GAGATGAGCACCTATCTCTTGCCTGTGGTCATTTCAGACAACGACTATCCAGTTCAAAGCAGCA
CTGGGACAGTGACTGTCCGGGTCTGTGCATGTGACCACCACGGGAACATGCAATCCTGCCATGC
GGAGGCGCTCATCCACCCCACGGGACTGAGCACGGGGGCTCTGGTTGCCATCCTTCTGTGCATC
GTGATCCTACTAGTGACAGTGGTGCTGTTTGCAGCTCTGAGGCGGCAGCGAAAAAAAGAGCCTT
TGATCATTTCCAAAGAGGACATCAGAGATAACATTGTCAGTTACAACGACGAAGGTGGTGGAGA
GGAGGACACCCAGGCTTTTGATATCGGCACCCTGAGGAATCCTGAAGCCATAGAGGACAACAAA
TTACGAAGGGACATTGTGCCCGAAGCCCTTTTCCTACCCCGACGGACTCCAACAGCTCGCGACA
ACACCGATGTCAGAGATTTCATTAACCAAAGGTTAAAGGAAAATGACACGGACCCCACTGCCCC
GCCATACGACTCCTTGGCCACTTACGCCTATGAAGGCACTGGCTCCGTGGCGGATTCCCTGAGC
TCGCTGGAGTCAGTGACCACGGATGCAGATCAAGACTATGATTACCTTAGTGACTGGGGACCTC
GATTCAAAAAGCTTGCAGATATGTATGGAGGAGTGGACAGTGACAAAGACTCCTAATCTGTTGC
CTTTTTCATTTTCCAATACGACACTGAAATATGTGAAGTGGCTATTTCTTTATATTTATCCACT
GCTCCGTGAAGGCTTCTCTGTTCTACCCGTTCCAAAAGCCAATGGCTGCAGTCCGTGTGGATCC
AATGTTAGAGACTTTTTTCTAGTACACTTTTATGAGCTTCCAAGGGGCAAATTTTTATTTTTTA
GTGCATCCAGTTAACCAAGTCAGCCCAACAGGCAGGTGCCGGAGGGGAGGACAGGAAACAGTAT
TTCCACTTGTTCTCAGGGCAACGTGCCCGCTTCCGTTGTCCTGGTGTTTTACTACACTCCATGT
CAGGTCAGCCAACTGCCCTAACTGTACATTTCACAGGCTAATGGGATAAAGGACTGTGCTTTAA
AGATAAAAATATCATCATAGTAAAAGAAATGAGGGCATATCGGCTCACAAAGAGATAAACTACA
TAGGGGTGTTTATTTGTGTCACAAAGAATTTAAAATAACACTTGCCCATGCTATTTGTTCTTCA
AGAACTTTCTCTGGCATCAACTACTATTCAAAACCTCAAATCCACCCACATGTTAAAATTCTCA
TTACTCTTAAGGAATAGAAGCAAATTAAACGGTAACATCCAAAAACAACCAGAAACCTAGTACG
ACTTCATTCCTTCCACTAACTCATAGTTTGTTATATCCTAGACTAGACATGCGAAAGTTTGCCT
TTGTACCATATAAAGGGGGAGGGAAATAGCTAATAATGTTAACAAAGGAAATATATTTTAGCAT
ACATTAAAAGTTTTGGCCACCACATATATCACGGGTCACTTGAAATTCTTTCAGCTATCAGTAG
GCTAATGTCAAAATTGTTTTAAAATTCTTGAAAGAATTTTCCTGAGACAAATTTTAACTTCTTG
TCTATAGTTGTCAGTATTATTCTACTATACTGTACATGAAAGTAGCAGTGTGAAGTACAATAAT
TCATATTCTTTGTATCCTTCTTACACGACTAAGCTGAATTAGTAAAGTTAGATTAAATAAAACT
TAAATCTCACTCTAGGAGTTCAGTGGAGAGGTTAGAGCCAGCCACACTTGAACCTAATACCCTG
CCCTTGACATCTGGAAACCTCTACATATTTATATAACGTGATACATTTGGATAAACAACATTGA
GATTATGATGAAAACCTACATATTCCATGTTTGGAAGACCCTTGGAAGAGCAAAATTGGATTCC
CTTAAACAAAAGTGTTTAAGATTGTAATTAAAATGATAGTTGATTTTCAAAAGCATTAATTTTT
TTTCATTGTTTTTAACTTTGCTTTCATGACCATCCTGCCATCCTTGACTTTGAACTAATGATAA
AGTAATGATCTCAAACTATGACAGAAAAGTAATGTAAAATCCATCCAATCTATTATTTCTCTAA
TTATGCAATTAGCCTCATAATTATTATCCAGAGGACCCAACCGAACTGAACTAATCCTTCTGGC
AGATTCAAATCGTTTATTTCACACGCTGTTCTAATGGCACTTATCATTAGAATCTTACCTTGTG
CAGTCATCAGAAATTCCAGCGTACTATAATGAAAACATCCTTGTTTTGAAAACCTAAAAGACAG
GCTCTGTATATATATATACTTAAGAATATGCTGACTTCACTTATTAGTCTTAGGGATTTATTTT
CAATTAATATTAATTTTCTACAAATAA

hide sequence

RefSeq Acc Id:

XM_034960236 ⟹ XP_034816127

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	78,989,868 - 79,126,100 (-)	NCBI
NHGRI_mPanPan1	5	77,143,505 - 77,280,097 (-)	NCBI
Mhudiblu_PPA_v0	5	79,017,179 - 79,152,645 (-)	NCBI

RefSeq Acc Id:

XM_055112480 ⟹ XP_054968455

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	78,986,650 - 79,126,434 (-)	NCBI
NHGRI_mPanPan1	5	77,140,291 - 77,280,100 (-)	NCBI

RefSeq Acc Id:

XM_063604530 ⟹ XP_063460600

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	78,999,714 - 79,126,446 (-)	NCBI

RefSeq Acc Id:

XM_063604531 ⟹ XP_063460601

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	78,989,868 - 79,051,390 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008970094	(Get FASTA)	NCBI Sequence Viewer
	XP_034816127	(Get FASTA)	NCBI Sequence Viewer
	XP_054968455	(Get FASTA)	NCBI Sequence Viewer
	XP_063460600	(Get FASTA)	NCBI Sequence Viewer
	XP_063460601	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000020903.1
	ENSPPAP00050019377
	ENSPPAP00050019383

RefSeq Acc Id:	XP_008970094 ⟸ XM_008971846
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AUM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTYRYFLLLFWVGQPYPTLSTPLSKRTSGFPAKKRALELSGNSKNELNRSKRSWMWNQFFLLE EYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRA QAINRRTGRPVEPESEFIIKIHDINDNEPIFTKEVYTATVPEMSDVGTFVVQVTATDADDPTYG NSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNI TLTDVNDNPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITDGEGLDMFDVIT DQETQEGIITVKKLLDFEKKKVYTLKVEASNPHVEPRFLYLGPFKDSATVRIVVEDVDEPPVFS KLAYILQIREDAQINTTIGSVTAQDPDAARNPVKYSVDRHTDMDRIFNIDSGNGSIFTSKLLDR ETLLWHNITVIATEINNPKQSSRVPLYIKVLDVNDNAPEFAEFYETFVCEKAKADQLIQTLHAV DKDDPYSGHQFSFSLAPEAASGSNFTIQDNKDNTAGILTRKNGYNRHEMSTYLLPVVISDNDYP VQSSTGTVTVRVCACDHHGNMQSCHAEALIHPTGLSTGALVAILLCIVILLVTVVLFAALRRQR KKEPLIISKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPEAIEDNKLRRDIVPEALFLPRRTP TARDNTDVRDFINQRLKENDTDPTAPPYDSLATYAYEGTGSVADSLSSLESVTTDADQDYDYLS DWGPRFKKLADMYGGVDSDKDS hide sequence

RefSeq Acc Id:	XP_034816127 ⟸ XM_034960236
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AUM4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000020903 ⟸ ENSPPAT00000043701

RefSeq Acc Id:	XP_054968455 ⟸ XM_055112480
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063460601 ⟸ XM_063604531
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063460600 ⟸ XM_063604530
- Peptide Label:	isoform X2

Protein Domains

Cadherin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000033662	Ensembl, UniProtKB/TrEMBL
	ENSPPAG00050014592	ENTREZGENE
Ensembl Transcript	ENSPPAT00000043701.1	UniProtKB/TrEMBL
	ENSPPAT00050030764	ENTREZGENE
	ENSPPAT00050030771	ENTREZGENE
Gene3D-CATH	4.10.900.10	UniProtKB/TrEMBL
	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_cytoplasmic-dom	UniProtKB/TrEMBL
	Catenin-bd_sf	UniProtKB/TrEMBL
KEGG Report	pps:100967674	UniProtKB/TrEMBL
NCBI Gene	CDH6	ENTREZGENE
PANTHER	CADHERIN-6	UniProtKB/TrEMBL
	PTHR24027	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_C	UniProtKB/TrEMBL
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A2R9AUM4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD