WIPF1 (WAS/WASL interacting protein family member 1) - Rat Genome Database

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Gene: WIPF1 (WAS/WASL interacting protein family member 1) Pan paniscus
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Symbol: WIPF1
Name: WAS/WASL interacting protein family member 1
RGD ID: 11691368
Description: ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); positive regulation of protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN actin filament (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAS/WASL-interacting protein family member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21377,223,785 - 77,347,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B77,238,760 - 77,362,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B61,837,128 - 61,960,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B179,290,685 - 179,316,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,290,685 - 179,316,695 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WIPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21377,223,785 - 77,347,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B77,238,760 - 77,362,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B61,837,128 - 61,960,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B179,290,685 - 179,316,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,290,685 - 179,316,695 (-)Ensemblpanpan1.1panPan2
WIPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382174,559,574 - 174,682,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2174,559,572 - 174,682,916 (-)EnsemblGRCh38hg38GRCh38
GRCh372175,424,302 - 175,547,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362175,132,548 - 175,255,873 (-)NCBINCBI36Build 36hg18NCBI36
Build 342175,249,808 - 175,324,811NCBI
Celera2169,037,733 - 169,161,112 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,305,224 - 167,428,467 (-)NCBIHuRef
CHM1_12175,430,425 - 175,553,733 (-)NCBICHM1_1
T2T-CHM13v2.02175,048,279 - 175,171,613 (-)NCBIT2T-CHM13v2.0
Wipf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39273,259,954 - 73,359,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl273,259,954 - 73,360,078 (-)EnsemblGRCm39 Ensembl
GRCm38273,429,610 - 73,529,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl273,429,610 - 73,529,734 (-)EnsemblGRCm38mm10GRCm38
MGSCv37273,267,674 - 73,367,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36273,230,456 - 73,330,249 (-)NCBIMGSCv36mm8
Celera275,116,177 - 75,216,066 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map243.68NCBI
Wipf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8378,721,486 - 78,824,199 (-)NCBIGRCr8
mRatBN7.2358,314,521 - 58,416,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,314,542 - 58,372,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx361,708,219 - 61,766,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0370,291,875 - 70,350,246 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0368,056,896 - 68,115,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0360,150,001 - 60,207,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,150,021 - 60,166,013 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0366,633,154 - 66,690,278 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4355,944,490 - 56,003,310 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1355,840,874 - 55,899,682 (-)NCBI
Celera357,842,394 - 57,900,610 (-)NCBICelera
Cytogenetic Map3q23NCBI
Wipf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955449760,382 - 831,007 (+)NCBIChiLan1.0ChiLan1.0
WIPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13618,574,298 - 18,653,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3618,576,813 - 18,697,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3618,583,586 - 18,706,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03618,710,269 - 18,832,843 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3618,710,269 - 18,832,790 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13618,787,537 - 18,909,829 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03618,785,832 - 18,908,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03618,896,780 - 19,019,287 (-)NCBIUU_Cfam_GSD_1.0
Wipf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303135,759,301 - 135,874,065 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365094,314,376 - 4,427,960 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11580,521,032 - 80,646,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21589,758,529 - 89,797,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WIPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11060,067,384 - 60,188,234 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1060,067,015 - 60,142,823 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040139,407,277 - 139,526,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wipf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478711,787,295 - 11,822,523 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478711,787,384 - 11,908,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000052778   ⟹   ENSPPAP00000029924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B179,290,685 - 179,316,695 (-)Ensembl
RefSeq Acc Id: XM_034954545   ⟹   XP_034810436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21377,223,785 - 77,347,483 (-)NCBI
NHGRI_mPanPan12B77,238,760 - 77,362,431 (-)NCBI
Mhudiblu_PPA_v02B61,837,128 - 61,960,468 (-)NCBI
RefSeq Acc Id: XM_034954546   ⟹   XP_034810437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21377,223,785 - 77,295,523 (-)NCBI
NHGRI_mPanPan12B77,238,760 - 77,278,048 (-)NCBI
Mhudiblu_PPA_v02B61,837,128 - 61,875,976 (-)NCBI
RefSeq Acc Id: XM_034954548   ⟹   XP_034810439
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21377,223,785 - 77,250,152 (-)NCBI
NHGRI_mPanPan12B77,238,760 - 77,265,154 (-)NCBI
Mhudiblu_PPA_v02B61,837,128 - 61,863,607 (-)NCBI
RefSeq Acc Id: XM_055108791   ⟹   XP_054964766
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21377,223,785 - 77,347,445 (-)NCBI
NHGRI_mPanPan12B77,238,760 - 77,362,425 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034810436 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810437 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810439 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964766 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029924.1
RefSeq Acc Id: XP_034810436   ⟸   XM_034954545
- UniProtKB: A0A2R9BJR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810437   ⟸   XM_034954546
- UniProtKB: A0A2R9BJR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810439   ⟸   XM_034954548
- UniProtKB: A0A2R9BJR0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000029924   ⟸   ENSPPAT00000052778
RefSeq Acc Id: XP_054964766   ⟸   XM_055108791
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052778.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  WAS/WASL-interacting_domain UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
NCBI Gene WIPF1 ENTREZGENE
PANTHER OS06G0326200 PROTEIN UniProtKB/TrEMBL
  WAS/WASL-INTERACTING PROTEIN FAMILY MEMBER 1 UniProtKB/TrEMBL
Pfam WH2 UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
SMART WH2 UniProtKB/TrEMBL
UniProt A0A2R9BJR0 ENTREZGENE, UniProtKB/TrEMBL