CD300A (CD300a molecule) - Rat Genome Database

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Gene: CD300A (CD300a molecule) Pan paniscus
Analyze
Symbol: CD300A
Name: CD300a molecule
RGD ID: 11683539
Description: ENCODES a protein that exhibits phosphatase binding (ortholog); INVOLVED IN establishment of localization in cell (ortholog); mast cell degranulation (ortholog); negative regulation of MAP kinase activity (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMRF35-like molecule 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,495,116 - 90,519,940 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,318,078 - 95,342,901 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,403,647 - 68,426,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,963,312 - 73,984,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,965,008 - 73,983,928 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CD300A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,495,116 - 90,519,940 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,318,078 - 95,342,901 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,403,647 - 68,426,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,963,312 - 73,984,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,965,008 - 73,983,928 (+)Ensemblpanpan1.1panPan2
CD300A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,466,373 - 74,484,798 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,466,399 - 74,484,798 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,462,512 - 72,480,937 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,974,117 - 69,992,528 (+)NCBINCBI36Build 36hg18NCBI36
Build 341769,974,116 - 69,992,526NCBI
Celera1769,054,982 - 69,073,423 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,871,733 - 67,890,151 (+)NCBIHuRef
CHM1_11772,527,066 - 72,545,481 (+)NCBICHM1_1
T2T-CHM13v2.01775,356,904 - 75,375,324 (+)NCBIT2T-CHM13v2.0
Cd300a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,780,006 - 114,792,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,780,867 - 114,795,480 (+)EnsemblGRCm39 Ensembl
GRCm3811114,889,152 - 114,901,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,890,041 - 114,904,654 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,751,355 - 114,765,965 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,706,131 - 114,720,741 (+)NCBIMGSCv36mm8
Celera11126,646,160 - 126,660,768 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
Cd300a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,428,826 - 100,441,693 (+)NCBIGRCr8
mRatBN7.21099,929,801 - 99,942,674 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,929,801 - 99,942,674 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,988,115 - 105,000,741 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,451,237 - 104,463,863 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,850,845 - 99,863,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,437,978 - 103,451,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,438,303 - 103,450,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,094,391 - 103,107,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,775,860 - 104,789,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,518,662 - 98,531,608 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Cd300a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,336,227 - 1,460,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,335,854 - 1,356,001 (+)NCBIChiLan1.0ChiLan1.0
CD300A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,952,428 - 5,976,328 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,574,310 - 6,598,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,624,768 - 6,648,730 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.196,662,883 - 6,689,292 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,766,525 - 6,792,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,826,376 - 6,852,693 (-)NCBIUU_Cfam_GSD_1.0
CD300A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1126,665,578 - 6,681,329 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103243088
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,153,766 - 47,173,780 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,154,437 - 47,170,038 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366694718,648 - 24,246 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd300a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,404,262 - 4,421,097 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,404,376 - 4,420,836 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024926236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024926237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024926238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004667349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010110712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010110713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_610901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000058385   ⟹   ENSPPAP00000035496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,965,008 - 73,983,928 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000058396   ⟹   ENSPPAP00000035507
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,965,785 - 73,983,258 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000058397   ⟹   ENSPPAP00000035508
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,965,785 - 73,983,258 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000058399   ⟹   ENSPPAP00000035510
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,965,785 - 73,983,258 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000058402   ⟹   ENSPPAP00000035513
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1773,969,586 - 73,983,258 (+)Ensembl
RefSeq Acc Id: XM_034942826   ⟹   XP_034798717
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,116 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,318,078 - 95,340,094 (+)NCBI
Mhudiblu_PPA_v01768,403,647 - 68,425,664 (+)NCBI
RefSeq Acc Id: XM_034942827   ⟹   XP_034798718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,116 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,318,078 - 95,340,094 (+)NCBI
Mhudiblu_PPA_v01768,403,647 - 68,425,664 (+)NCBI
RefSeq Acc Id: XM_034942828   ⟹   XP_034798719
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,138 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,318,100 - 95,340,094 (+)NCBI
Mhudiblu_PPA_v01768,403,669 - 68,425,664 (+)NCBI
RefSeq Acc Id: XM_055101474   ⟹   XP_054957449
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,155 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,318,117 - 95,340,094 (+)NCBI
RefSeq Acc Id: XM_055101475   ⟹   XP_054957450
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,496,493 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,319,437 - 95,340,094 (+)NCBI
RefSeq Acc Id: XM_057300268   ⟹   XP_057156251
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,155 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,318,117 - 95,340,094 (+)NCBI
RefSeq Acc Id: XM_057300269   ⟹   XP_057156252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,498,306 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,320,391 - 95,340,094 (+)NCBI
RefSeq Acc Id: XM_057300270   ⟹   XP_057156253
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,503,051 - 90,517,111 (+)NCBI
NHGRI_mPanPan11795,326,030 - 95,340,094 (+)NCBI
RefSeq Acc Id: XR_010110712
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,155 - 90,517,111 (+)NCBI
RefSeq Acc Id: XR_010110713
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21990,495,155 - 90,519,940 (+)NCBI
RefSeq Acc Id: XP_034798717   ⟸   XM_034942826
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C193 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034798718   ⟸   XM_034942827
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034798719   ⟸   XM_034942828
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0T0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000035496   ⟸   ENSPPAT00000058385
Ensembl Acc Id: ENSPPAP00000035510   ⟸   ENSPPAT00000058399
Ensembl Acc Id: ENSPPAP00000035507   ⟸   ENSPPAT00000058396
Ensembl Acc Id: ENSPPAP00000035508   ⟸   ENSPPAT00000058397
Ensembl Acc Id: ENSPPAP00000035513   ⟸   ENSPPAT00000058402
RefSeq Acc Id: XP_054957449   ⟸   XM_055101474
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C193 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054957450   ⟸   XM_055101475
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C193 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156251   ⟸   XM_057300268
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156252   ⟸   XM_057300269
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156253   ⟸   XM_057300270
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C0T0 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040554 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058385.1 UniProtKB/TrEMBL
  ENSPPAT00000058396.1 UniProtKB/TrEMBL
  ENSPPAT00000058397.1 UniProtKB/TrEMBL
  ENSPPAT00000058399.1 UniProtKB/TrEMBL
  ENSPPAT00000058402.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD300_family_receptors UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene CD300A ENTREZGENE
PANTHER CMRF35-LIKE MOLECULE 8 UniProtKB/TrEMBL
  POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/TrEMBL
Pfam SIT UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9C0R2_PANPA UniProtKB/TrEMBL
  A0A2R9C0R3_PANPA UniProtKB/TrEMBL
  A0A2R9C0T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C193 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C3U0_PANPA UniProtKB/TrEMBL