LOC100968071 (large ribosomal subunit protein eL20-like) - Rat Genome Database

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Gene: LOC100968071 (large ribosomal subunit protein eL20-like) Pan paniscus
Analyze
Symbol: LOC100968071 (Ensembl: RPL18A)
Name: large ribosomal subunit protein eL20-like (Ensembl:ribosomal protein L18a)
RGD ID: 11667990
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic large ribosomal subunit (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L18a-like
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24107,083,575 - 107,084,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15105,237,182 - 105,237,832 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05107,187,642 - 107,188,283 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,989,072 - 112,989,735 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,315,535 - 18,318,978 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034960332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000047014   ⟹   ENSPPAP00000024189
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1918,315,535 - 18,318,978 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000047022   ⟹   ENSPPAP00000024197
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1918,315,623 - 18,318,925 (+)Ensembl
RefSeq Acc Id: XM_034960332   ⟹   XP_034816223
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24107,083,575 - 107,084,181 (-)NCBI
NHGRI_mPanPan15105,237,182 - 105,237,832 (-)NCBI
Mhudiblu_PPA_v05107,187,642 - 107,188,283 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034816223 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024197.1
  ENSPPAP00000039748.1
  ENSPPAP00000039753.1
Reference Protein Sequences
RefSeq Acc Id: XP_034816223   ⟸   XM_034960332
- UniProtKB: A0A2R9CFF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000024197   ⟸   ENSPPAT00000047022
RefSeq Acc Id: ENSPPAP00000024189   ⟸   ENSPPAT00000047014
Protein Domains
Large ribosomal subunit protein eL20


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035235 Ensembl, UniProtKB/TrEMBL
  ENSPPAG00000042559 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047022.1 UniProtKB/TrEMBL
  ENSPPAT00000062660.1 UniProtKB/TrEMBL
  ENSPPAT00000062665.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.10 UniProtKB/TrEMBL
InterPro 50S_L18Ae/Ribosomal_L18a/L20 UniProtKB/TrEMBL
  Ribosomal_L18a//L18Ae/LX UniProtKB/TrEMBL
  Ribosomal_L18a/L20_eukaryotes UniProtKB/TrEMBL
NCBI Gene LOC100968071 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L18A UniProtKB/TrEMBL
  PTHR10052 UniProtKB/TrEMBL
Pfam Ribosomal_L18A UniProtKB/TrEMBL
PIRSF Ribosomal_L18a UniProtKB/TrEMBL
Superfamily-SCOP RplX-like UniProtKB/TrEMBL
UniProt A0A2R9B3M1_PANPA UniProtKB/TrEMBL
  A0A2R9CFF5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100968071  large ribosomal subunit protein eL20-like  LOC100968071  60S ribosomal protein L18a-like  Symbol and/or name change 5135510 APPROVED