Gm9530 (predicted gene 9530) - Rat Genome Database

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Gene: Gm9530 (predicted gene 9530) Mus musculus
Analyze
Symbol: Gm9530
Name: predicted gene 9530
RGD ID: 11081601
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,939,193 - 154,959,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,939,182 - 154,959,294 (-)EnsemblGRCm39 Ensembl
GRCm381155,063,447 - 155,083,264 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,063,447 - 155,083,266 (-)EnsemblGRCm38mm10GRCm38
MGSCv371156,910,577 - 156,912,449 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1157,492,763 - 157,512,533 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map166.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9530Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9530Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9530Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in Gm9530
973 total Variants

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:102
Interacting mature miRNAs:104
Transcripts:ENSMUST00000181160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 71 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse

1 to 10 of 71 rows





RefSeq Transcripts NR_151545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000181160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,193 - 154,959,012 (-)Ensembl
GRCm38.p6 Ensembl1155,063,447 - 155,083,266 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,182 - 154,959,261 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,189 - 154,959,257 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,193 - 154,959,294 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,203 - 154,956,788 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,941,011 - 154,956,529 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,195 - 154,945,598 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,193 - 154,941,194 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,195 - 154,940,125 (-)Ensembl
Ensembl Acc Id: ENSMUST00000348169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,939,193 - 154,940,023 (-)Ensembl
RefSeq Acc Id: NR_151545
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,939,193 - 154,959,010 (-)NCBI
GRCm381155,063,447 - 155,083,264 (-)NCBI
Sequence:
RGD ID:15092224
Promoter ID:EPDNEWNC_M134
Type:single initiation site
Name:Gm9530_1
Description:predicted gene 9530 [Source:MGI Symbol;Acc:MGI:3779939]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381155,083,261 - 155,083,321EPDNEWNC
RGD ID:6875306
Promoter ID:EPDNEW_M1104
Type:single initiation site
Name:Gm9530_1
Description:Mus musculus predicted gene 9530 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381155,083,261 - 155,083,321EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000096950 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181160 ENTREZGENE
MGD MGI:3779939 ENTREZGENE
NCBI Gene Gm9530 ENTREZGENE
PhenoGen Gm9530 PhenoGen
RNAcentral URS0000776CC3 RNACentral
  URS0000CCE003 RNACentral