Mir155hg (Mir155 host gene (non-protein coding))

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Gene: Mir155hg (Mir155 host gene (non-protein coding)) Mus musculus

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Symbol:

Mir155hg

Name:

Mir155 host gene (non-protein coding)

RGD ID:

11040463

MGI Page

MGI

Description:

Orthologous to human MIR155HG (MIR155 host gene).

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

Bi; Bic; Gm26667

RGD Orthologs

Human

Rat

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	84,509,911 - 84,512,133 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	84,500,055 - 84,512,133 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	84,713,023 - 84,715,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	84,703,167 - 84,715,245 (+)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	16	C3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's Disease, Early-Onset, with Cerebral Amyloid Angiopathy (ISO)

malignant astrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP,ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

cadmium dichloride (ISO)

dimethylarsinic acid (EXP)

lipopolysaccharide (ISO)

methylarsonic acid (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

pevonedistat (ISO)

progesterone (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (EXP)

sodium arsenite (EXP,ISO)

temozolomide (ISO)

testosterone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of dendritic cell antigen processing and presentation (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

Molecular Function

Hsp70 protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas.	Wang W, etal., Oncotarget. 2016 Oct 13. doi: 10.18632/oncotarget.12624.

Additional References at PubMed

PMID:11675008	PMID:23329697	PMID:24200680	PMID:24316575	PMID:27899360	PMID:32529543	PMID:33511575	PMID:34865098	PMID:36321836	PMID:36879321	PMID:37324190

Genomics

Comparative Map Data

Mir155hg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	84,509,911 - 84,512,133 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	84,500,055 - 84,512,133 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	84,713,023 - 84,715,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	84,703,167 - 84,715,245 (+)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	16	C3.3	NCBI

MIR155HG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	25,562,145 - 25,575,168 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	25,560,592 - 25,575,168 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	26,934,457 - 26,947,480 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	25,868,162 - 25,868,226 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	21	12,117,862 - 12,130,891 (+)	NCBI		Celera
HuRef	21	12,337,598 - 12,350,626 (+)	NCBI		HuRef
CHM1_1	21	26,495,123 - 26,508,151 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	23,919,721 - 23,932,747 (+)	NCBI		T2T-CHM13v2.0

Mir155hg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	37,259,928 - 37,262,157 (+)	NCBI		GRCr8
mRatBN7.2	11	23,773,468 - 23,775,697 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	11	32,479,835 - 32,482,066 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	25,180,234 - 25,182,465 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	24,368,940 - 24,371,171 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	24,175,417 - 24,177,646 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	11	23,613,047 - 23,615,276 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

Variants

Variants in Mir155hg
89 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	58
Interacting mature miRNAs:	58
Transcripts:	ENSMUST00000180991
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301394	Eae11_m	susceptibility to experimental allergic encephalomyelitis 11 (mouse)			Not determined		16	53561891	87562035	Mouse
1302194	Pgia10_m	proteoglycan induced arthritis 10 (mouse)			Not determined		16	68600722	98008968	Mouse
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
1558740	Bpq9_m	blood pressure QTL 9 (mouse)			Not determined		16	63327336	97327472	Mouse
4141113	Tgq28_m	triglyceride QTL 28 (mouse)			Not determined			62986646	96986646	Mouse
1301364	Lith14_m	lithogenic gene 14 (mouse)			Not determined		16	55661846	89661961	Mouse
4142262	Lmr18_m	leishmaniasis resistance 18 (mouse)			Not determined		16	69127611	98008968	Mouse
11049573	Lmr18b_m	leishmaniasis resistance 18b (mouse)					16	69127611	98008968	Mouse
1301598	Renf2_m	renal failure 2 (mouse)			Not determined		16	70380252	98008968	Mouse
11049574	Lmr18a_m	leishmaniasis resistance 18a (mouse)					16	69127611	98008968	Mouse
11522753	Cocia19_m	cocaine-induced activity, QTL 19 (mouse)					16	69254482	98008968	Mouse
1300928	Etia_m	ethanol induced activation (mouse)			Not determined		16	63313907	97314016	Mouse
1301125	Sluc27_m	susceptibility to lung cancer 27 (mouse)			Not determined		16	61608644	95608764	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
26884416	Bzwq5_m	bi-zygomatic width QTL 5, 5 week (mouse)					16	37320362	84696888	Mouse
1301032	Tauph_m	tau phosphorylation (mouse)			Not determined		16	69076132	98008968	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_132106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY096003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT027693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY467757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000180991

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,509,911 - 84,512,133 (+)	Ensembl
GRCm38.p6 Ensembl	16	84,713,023 - 84,715,245 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000185662

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	84,500,055 - 84,512,133 (+)	Ensembl
GRCm38.p6 Ensembl	16	84,703,167 - 84,715,245 (+)	Ensembl

RefSeq Acc Id:

NR_132106

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	84,509,911 - 84,512,133 (+)	NCBI
GRCm38	16	84,713,023 - 84,715,245 (+)	NCBI

Sequence:

show sequence

AATTCACAGACTTTCCTCATGAAACCAGCTCATCTGAGAAAACAGCAAAGTTTAAAAAAGAAAT
ACTATCAGTGCTGCAAACCAGGAAGGGGAAGTGTGTGGTTTAAGTTGCATATCCCTTATCCTCT
GGCTGCTGGAGGCTTGCTGAAGGCTGTATGCTGTTAATGCTAATTGTGATAGGGGTTTTGGCCT
CTGACTGACTCCTACCTGTTAGCATTAACAGGACACAAGGCCTGTTACTAGCACTCACATGGAA
CAAATGGCCACCGTGGGAGGATGACAAGTCCAAGAGTCACCCTGCTGGATGAACGTAGATGTCA
GACTCTATCATTTAATGTGCTAGTCATAACCTGGTTACTAGGATAGTCCACTGTAAGTGTTACG
ATAAATGTCATTTAAAAGATAGATCAGCAGTATCCTAAACAACATCTCAACTTCAAGCCCACAT
GTTTATTTTTTATCTTGAATGGAAAGTGAAACTTGTATCATTTTTATTTCAAAATTATGTTCAT
AACCATCTTCAATGATTCAACCAGAATACAAAATGAATGCACTAAAAAGGACATTTCTATATTT
CTGTAGTTAAAATTCAGGACGGCCATTCTCGACTGACATCTAGGATTGTCTGGAATACCTCTTG
TAAGACTTGGAATTGGCATTTTTTCCACATTACAATGTATTAGTCAACTTTGATTTAAAATTTG
TAACTCTTGTGTTTTAGTGTAAGGAAAAATTTAGGGTTAGTGTTAGAGTTTAGGGCTAGGTAAG
GAAAAACTGAGTCAACACTGAATGATTTTTTTAAAATCTATGAGCCAGCTGTTGGTAGTTTACT
CCTTTAATCCCAGCACTCGGGAGGCAGAGACAGGCAGATGGCTGAGTCGAAGGCCAACCTGGTC
TACAGAGTGAGCTCCAGGACAGCCTTAGCTACACAGAAAAATGCCTTATCAAAAAATTAAGAAA
ATAAGATGAAGTATTAAAAAGTGACATGACAAATCATTCCTGAGGGCTACCTATATATTCCTCA
CACGGTATAAATATTTAATTTAATTAATATTTAATTTCAAATATTCACATTTGAAATGAAACCC
AAATCTGGGTTCAAGCTTACTGCTTTAGCTGCACAGTAAAGCTGTGTAGTAAGGAGACCCACGT
TTCCTACGCATTTCTTCATGAATGCGGATGAAACTTTACAAGGTTGGTGTGCAGCTCACTGGAG
ATGAACAACTCTTTGTAAGGTAATAAAATCCCACAGTGATGTCTTAAA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:5477161	AgrOrtholog
Ensembl Genes	ENSMUSG00000097418	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000180991	ENTREZGENE
MGD	MGI:5477161	ENTREZGENE
NCBI Gene	Mir155hg	ENTREZGENE
PhenoGen	Mir155hg	PhenoGen
RNAcentral	URS000076237B	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-14	Mir155hg	Mir155 host gene (non-protein coding)		Mir155 host gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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