SLC25A47P1 (solute carrier family 25 member 47 pseudogene 1) - Rat Genome Database

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Gene: SLC25A47P1 (solute carrier family 25 member 47 pseudogene 1) Homo sapiens
Analyze
Symbol: SLC25A47P1
Name: solute carrier family 25 member 47 pseudogene 1
RGD ID: 10768876
HGNC Page HGNC:43860
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SLC25A47  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,263,400 - 59,263,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,263,389 - 59,263,802 (-)EnsemblGRCh38hg38GRCh38
GRCh371159,030,873 - 59,031,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q12.1NCBI
CHM1_11158,896,540 - 58,896,846 (-)NCBICHM1_1
T2T-CHM13v2.01159,212,612 - 59,212,918 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:330
Interacting mature miRNAs:354
Transcripts:ENST00000531577
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 11 1 38 1 3 12
Low 165 22 26 141 542 2 19 4 1 5 80 138 141 1 15
Below cutoff 259 271 137 26 443 18 321 41 69 20 196 273 12 74 205

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000531577
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,263,389 - 59,263,802 (-)Ensembl
RefSeq Acc Id: XM_011508309   ⟹   XP_011506611
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_11158,891,296 - 58,917,730 (-)NCBI
RefSeq Acc Id: XM_011545415   ⟹   XP_011543717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381159,260,051 - 59,284,695 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC SLC25A47P1 COSMIC
Ensembl Genes ENSG00000254799 Ensembl
GTEx ENSG00000254799 GTEx
HGNC ID HGNC:43860 ENTREZGENE
Human Proteome Map SLC25A47P1 Human Proteome Map
NCBI Gene SLC25A47P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC25A47P1  solute carrier family 25 member 47 pseudogene 1    solute carrier family 25, member 47 pseudogene 1  Symbol and/or name change 5135510 APPROVED