RNU1-48P (RNA, U1 small nuclear 48, pseudogene) - Rat Genome Database

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Gene: RNU1-48P (RNA, U1 small nuclear 48, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: RNU1-48P
Name: RNA, U1 small nuclear 48, pseudogene
RGD ID: 10450717
HGNC Page HGNC:48390
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: RNU1-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y18,486,511 - 18,486,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY18,486,511 - 18,486,672 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y20,648,397 - 20,648,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapYq11.222NCBI
T2T-CHM13v2.0Y19,392,996 - 19,393,157 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:157
Interacting mature miRNAs:158
Transcripts:ENST00000516400
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 3 9 2 3
Below cutoff 18 11 10 1 2 25 17 89 1 6 10 1 6 18

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_084014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC068541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000516400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY18,486,511 - 18,486,672 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU1-48P COSMIC
Ensembl Genes ENSG00000252209 Ensembl
GTEx ENSG00000252209 GTEx
HGNC ID HGNC:48390 ENTREZGENE
Human Proteome Map RNU1-48P Human Proteome Map
NCBI Gene RNU1-48P ENTREZGENE