LOC120094416 (U1 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094416 (U1 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120094416
Name: U1 spliceosomal RNA
RGD ID: 41333950
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U1
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,344,479 - 20,344,620 (-)NCBIGRCr8
mRatBN7.2812,063,074 - 12,063,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,063,074 - 12,063,215 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl812,063,074 - 12,063,215 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl813,778,421 - 13,778,562 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120094416
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,344,479 - 20,344,620 (-)NCBIGRCr8
mRatBN7.2812,063,074 - 12,063,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,063,074 - 12,063,215 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl812,063,074 - 12,063,215 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl813,778,421 - 13,778,562 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q12NCBI
RNU1-97P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y23,740,942 - 23,741,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY23,740,942 - 23,741,105 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y25,887,089 - 25,887,252 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapYq11.223NCBI
T2T-CHM13v2.0Y25,121,475 - 25,121,638 (+)NCBIT2T-CHM13v2.0
Gm26150
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39836,873,248 - 36,873,398 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl836,873,248 - 36,873,398 (-)EnsemblGRCm39 Ensembl
GRCm38836,406,094 - 36,406,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl836,406,094 - 36,406,244 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8A4NCBI
LOC119867708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1420,836,022 - 20,836,185 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01421,098,976 - 21,099,139 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1421,098,976 - 21,099,139 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11421,245,216 - 21,245,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,978,729 - 20,978,892 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01421,236,706 - 21,236,869 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,063,074 - 12,063,215 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31672 BioCyc
Ensembl Genes ENSRNOG00000060736 Ensembl, ENTREZGENE
NCBI Gene LOC120094416 ENTREZGENE
PhenoGen LOC120094416 PhenoGen
RatGTEx ENSRNOG00000060736 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094416  U1 spliceosomal RNA  U1  U1 spliceosomal RNA  Data merged from RGD:15013547 737654 PROVISIONAL
2021-01-27 LOC120094416  U1 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U1  U1 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL