MTCO1P22 (MT-CO1 pseudogene 22) - Rat Genome Database

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Gene: MTCO1P22 (MT-CO1 pseudogene 22) Homo sapiens
Analyze
Symbol: MTCO1P22
Name: MT-CO1 pseudogene 22
RGD ID: 10450353
HGNC Page HGNC:52087
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: mitochondrially encoded cytochrome c oxidase I pseudogene 22
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385100,053,686 - 100,055,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5100,053,686 - 100,055,045 (-)EnsemblGRCh38hg38GRCh38
GRCh37599,389,390 - 99,390,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q21.1NCBI
CHM1_1598,822,033 - 98,823,392 (-)NCBICHM1_1
T2T-CHM13v2.05100,560,945 - 100,562,305 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENST00000604619
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 109 216 63 17 20 13 149 225 302 20 13 27 4 18 120
Below cutoff 1748 1924 1047 351 758 214 3206 1712 2791 165 770 931 137 902 2156

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000604619
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5100,053,686 - 100,055,045 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTCO1P22 COSMIC
Ensembl Genes ENSG00000271207 Ensembl, ENTREZGENE
GTEx ENSG00000271207 GTEx
HGNC ID HGNC:52087 ENTREZGENE
Human Proteome Map MTCO1P22 Human Proteome Map
NCBI Gene MTCO1P22 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTCO1P22  MT-CO1 pseudogene 22    mitochondrially encoded cytochrome c oxidase I pseudogene 22  Symbol and/or name change 5135510 APPROVED
2016-07-26 MTCO1P22  mitochondrially encoded cytochrome c oxidase I pseudogene 22    MT-CO1 pseudogene 22  Symbol and/or name change 5135510 APPROVED