RN7SKP80 (RN7SK pseudogene 80) - Rat Genome Database

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Pathways
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Gene: RN7SKP80 (RN7SK pseudogene 80) Homo sapiens
Analyze
Symbol: RN7SKP80
Name: RN7SK pseudogene 80
RGD ID: 10413805
HGNC Page HGNC:45804
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 80
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,565,062 - 42,565,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,565,048 - 42,565,330 (-)EnsemblGRCh38hg38GRCh38
GRCh372242,961,068 - 42,961,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q13.2NCBI
CHM1_12242,920,201 - 42,920,468 (-)NCBICHM1_1
T2T-CHM13v2.02243,045,927 - 43,046,194 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:205
Interacting mature miRNAs:208
Transcripts:ENST00000365188
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 3 4 96 2 27 13 28 3 26 16 2 16
Low 2149 1838 1377 363 1194 218 3451 1219 2718 292 1348 1478 153 973 2058 4
Below cutoff 235 944 266 191 356 177 703 802 835 90 50 75 15 206 570

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000365188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2242,565,048 - 42,565,330 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP80 COSMIC
Ensembl Genes ENSG00000202058 Ensembl, ENTREZGENE
GTEx ENSG00000202058 GTEx
HGNC ID HGNC:45804 ENTREZGENE
Human Proteome Map RN7SKP80 Human Proteome Map
NCBI Gene RN7SKP80 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP80  RN7SK pseudogene 80    RNA, 7SK small nuclear pseudogene 80  Symbol and/or name change 5135510 APPROVED