RN7SKP151 (RN7SK pseudogene 151) - Rat Genome Database

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Gene: RN7SKP151 (RN7SK pseudogene 151) Homo sapiens
Analyze
Symbol: RN7SKP151
Name: RN7SK pseudogene 151
RGD ID: 10413419
HGNC Page HGNC:45875
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 151
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,353,208 - 13,353,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,353,208 - 13,353,523 (+)EnsemblGRCh38hg38GRCh38
GRCh371113,374,755 - 13,375,070 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11p15.3NCBI
CHM1_11113,373,714 - 13,374,029 (+)NCBICHM1_1
T2T-CHM13v2.01113,445,972 - 13,446,287 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:253
Count of miRNA genes:242
Interacting mature miRNAs:252
Transcripts:ENST00000410230
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 3 5 1
Low 67 139 135 24 209 20 540 82 201 7 143 177 4 65 353 1
Below cutoff 746 921 600 168 507 100 1834 825 1118 70 537 619 74 470 1236 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1113,353,208 - 13,353,523 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP151 COSMIC
Ensembl Genes ENSG00000222162 Ensembl, ENTREZGENE
GTEx ENSG00000222162 GTEx
HGNC ID HGNC:45875 ENTREZGENE
Human Proteome Map RN7SKP151 Human Proteome Map
NCBI Gene RN7SKP151 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP151  RN7SK pseudogene 151    RNA, 7SK small nuclear pseudogene 151  Symbol and/or name change 5135510 APPROVED