RN7SKP149 (RN7SK pseudogene 149) - Rat Genome Database

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Gene: RN7SKP149 (RN7SK pseudogene 149) Homo sapiens
Analyze
Symbol: RN7SKP149
Name: RN7SK pseudogene 149
RGD ID: 10400789
HGNC Page HGNC:45873
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 149
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X143,197,352 - 143,197,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX143,197,248 - 143,197,591 (-)EnsemblGRCh38hg38GRCh38
GRCh37X142,285,138 - 142,285,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq27.3NCBI
CHM1_1X142,196,401 - 142,196,640 (-)NCBICHM1_1
T2T-CHM13v2.0X141,506,032 - 141,506,271 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:116
Interacting mature miRNAs:118
Transcripts:ENST00000363008
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 1 5 4 2
Below cutoff 5 2 1 9 5 1 11 1 12 5 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX143,197,248 - 143,197,591 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP149 COSMIC
Ensembl Genes ENSG00000199878 Ensembl
GTEx ENSG00000199878 GTEx
HGNC ID HGNC:45873 ENTREZGENE
Human Proteome Map RN7SKP149 Human Proteome Map
NCBI Gene RN7SKP149 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP149  RN7SK pseudogene 149    RNA, 7SK small nuclear pseudogene 149  Symbol and/or name change 5135510 APPROVED