TRMT112P5 (tRNA methyltransferase subunit 11-2 pseudogene 5) - Rat Genome Database

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Gene: TRMT112P5 (tRNA methyltransferase subunit 11-2 pseudogene 5) Homo sapiens
Analyze
Symbol: TRMT112P5
Name: tRNA methyltransferase subunit 11-2 pseudogene 5
RGD ID: 10400230
HGNC Page HGNC:44024
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 5
Related Functional Gene: TRMT112  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,845,078 - 139,845,411 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,845,078 - 139,845,411 (-)EnsemblGRCh38hg38GRCh38
GRCh373139,563,920 - 139,564,253 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q23NCBI
CHM1_13139,527,287 - 139,527,620 (-)NCBICHM1_1
T2T-CHM13v2.03142,592,472 - 142,592,805 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:54
Interacting mature miRNAs:54
Transcripts:ENST00000511173
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 6 2 2 21 2
Below cutoff 17 20 20 4 12 1 91 64 114 3 171 11 3 19 73

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000511173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3139,845,078 - 139,845,411 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TRMT112P5 COSMIC
Ensembl Genes ENSG00000250161 Ensembl, ENTREZGENE
GTEx ENSG00000250161 GTEx
HGNC ID HGNC:44024 ENTREZGENE
Human Proteome Map TRMT112P5 Human Proteome Map
NCBI Gene TRMT112P5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-30 TRMT112P5  tRNA methyltransferase subunit 11-2 pseudogene 5    tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 5  Symbol and/or name change 5135510 APPROVED