Gene: RNU6-663P (RNA, U6 small nuclear 663, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-663P |
Name: |
RNA, U6 small nuclear 663, pseudogene |
RGD ID: |
10400190 |
HGNC Page |
HGNC:47626 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 32,911,493 - 32,911,598 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 32,911,493 - 32,911,598 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 8 | 32,769,011 - 32,769,116 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 8 | p12 | NCBI | | | | | CHM1_1 | 8 | 32,970,446 - 32,970,551 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 33,181,598 - 33,181,703 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-663P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 32,911,493 - 32,911,598 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 32,911,493 - 32,911,598 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 8 | 32,769,011 - 32,769,116 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 8 | p12 | NCBI | | | | | CHM1_1 | 8 | 32,970,446 - 32,970,551 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 33,181,598 - 33,181,703 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm22359 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | X | 153,494,254 - 153,494,361 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 153,494,254 - 153,494,361 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | X | 154,711,258 - 154,711,365 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 154,711,258 - 154,711,365 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | X | F3 | NCBI | | | | |
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Rnu6-663 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 188,914,676 - 188,914,776 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 168,537,148 - 168,537,248 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 168,537,148 - 168,537,248 (-) | NCBI | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 3 | 168,537,148 - 168,537,248 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 3 | 176,928,365 - 176,928,462 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 3 | q43 | NCBI | | | | |
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LOC119865544 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 13 | 49,361,700 - 49,361,812 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 50,092,061 - 50,092,174 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 13 | 50,092,061 - 50,092,174 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 13 | 49,765,963 - 49,766,076 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 49,287,231 - 49,287,343 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 50,233,556 - 50,233,668 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 85 | Count of miRNA genes: | 84 | Interacting mature miRNAs: | 85 | Transcripts: | ENST00000391105 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
adipose tissue |
appendage |
High |
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Medium |
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Low |
3
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2
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6
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2
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5
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2
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4
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4
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9
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2
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34
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9
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1
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1
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Below cutoff |
6
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6
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10
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2
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6
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2
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12
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7
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54
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5
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53
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8
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1
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7
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Sequence
RefSeq Acc Id: |
ENST00000391105 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 8 | 32,911,493 - 32,911,598 (-) | Ensembl |
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Additional Information
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