Gm22359 (predicted gene, 22359) - Rat Genome Database

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Gene: Gm22359 (predicted gene, 22359) Mus musculus
Analyze
Symbol: Gm22359
Name: predicted gene, 22359
RGD ID: 15002311
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X153,494,254 - 153,494,361 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX153,494,254 - 153,494,361 (+)EnsemblGRCm39 Ensembl
GRCm38X154,711,258 - 154,711,365 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX154,711,258 - 154,711,365 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22359
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X153,494,254 - 153,494,361 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX153,494,254 - 153,494,361 (+)EnsemblGRCm39 Ensembl
GRCm38X154,711,258 - 154,711,365 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX154,711,258 - 154,711,365 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF3NCBI
RNU6-663P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38832,911,493 - 32,911,598 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl832,911,493 - 32,911,598 (-)EnsemblGRCh38hg38GRCh38
GRCh37832,769,011 - 32,769,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8p12NCBI
CHM1_1832,970,446 - 32,970,551 (-)NCBICHM1_1
T2T-CHM13v2.0833,181,598 - 33,181,703 (-)NCBIT2T-CHM13v2.0
Rnu6-663
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,914,676 - 188,914,776 (-)NCBIGRCr8
mRatBN7.23168,537,148 - 168,537,248 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,537,148 - 168,537,248 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl3168,537,148 - 168,537,248 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3176,928,365 - 176,928,462 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q43NCBI
LOC119865544
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1349,361,700 - 49,361,812 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01350,092,061 - 50,092,174 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1350,092,061 - 50,092,174 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11349,765,963 - 49,766,076 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01349,287,231 - 49,287,343 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01350,233,556 - 50,233,668 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22359
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:49
Interacting mature miRNAs:49
Transcripts:ENSMUST00000082884
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX119955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX153,494,254 - 153,494,361 (+)Ensembl
GRCm38.p6 EnsemblX154,711,258 - 154,711,365 (+)Ensembl
RefSeq Acc Id: XR_004940482
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X153,494,254 - 153,494,361 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064818 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082884 ENTREZGENE
MGD MGI:5452136 ENTREZGENE
NCBI Gene Gm22359 ENTREZGENE
PhenoGen Gm22359 PhenoGen