MTCO2P4 (MT-CO2 pseudogene 4) - Rat Genome Database

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Gene: MTCO2P4 (MT-CO2 pseudogene 4) Homo sapiens
Analyze
Symbol: MTCO2P4
Name: MT-CO2 pseudogene 4
RGD ID: 10400004
HGNC Page HGNC:50349
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: mitochondrially encoded cytochrome c oxidase II pseudogene 4
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,091,263 - 103,091,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,091,263 - 103,091,509 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,103,491 - 104,103,737 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q22.3NCBI
CHM1_18104,144,522 - 104,144,768 (+)NCBICHM1_1
T2T-CHM13v2.08104,219,205 - 104,219,451 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:186
Interacting mature miRNAs:191
Transcripts:ENST00000517968
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 12 1 13 14 1 6 16 6 4 8
Below cutoff 68 107 38 5 48 3 171 46 61 11 43 36 2 57 105

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8103,091,263 - 103,091,509 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTCO2P4 COSMIC
Ensembl Genes ENSG00000253977 Ensembl, ENTREZGENE
GTEx ENSG00000253977 GTEx
HGNC ID HGNC:50349 ENTREZGENE
Human Proteome Map MTCO2P4 Human Proteome Map
NCBI Gene MTCO2P4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTCO2P4  MT-CO2 pseudogene 4    mitochondrially encoded cytochrome c oxidase II pseudogene 4  Symbol and/or name change 5135510 APPROVED
2016-07-26 MTCO2P4  mitochondrially encoded cytochrome c oxidase II pseudogene 4    MT-CO2 pseudogene 4  Symbol and/or name change 5135510 APPROVED