RNU2-64P (RNA, U2 small nuclear 64, pseudogene) - Rat Genome Database

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Gene: RNU2-64P (RNA, U2 small nuclear 64, pseudogene) Homo sapiens
Analyze
Symbol: RNU2-64P
Name: RNA, U2 small nuclear 64, pseudogene
RGD ID: 10399813
HGNC Page HGNC:48557
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU2-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38373,110,994 - 73,111,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl373,110,992 - 73,111,182 (+)EnsemblGRCh38hg38GRCh38
GRCh37373,160,145 - 73,160,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p13NCBI
CHM1_1373,113,520 - 73,113,705 (+)NCBICHM1_1
T2T-CHM13v2.0373,152,509 - 73,152,694 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU2-64P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38373,110,994 - 73,111,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl373,110,992 - 73,111,182 (+)EnsemblGRCh38hg38GRCh38
GRCh37373,160,145 - 73,160,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p13NCBI
CHM1_1373,113,520 - 73,113,705 (+)NCBICHM1_1
T2T-CHM13v2.0373,152,509 - 73,152,694 (+)NCBIT2T-CHM13v2.0
Gm22973
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,087,121 - 59,087,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,087,121 - 59,087,311 (+)EnsemblGRCm39 Ensembl
GRCm381259,040,335 - 59,040,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,040,335 - 59,040,525 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
Rnu2-64
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,871,061 - 186,871,251 (-)NCBIGRCr8
mRatBN7.22184,182,219 - 184,182,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,182,219 - 184,182,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2198,772,287 - 198,772,477 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q34NCBI
LOC119869927
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha117,928,230 - 17,928,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0116,830,068 - 16,830,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl116,830,068 - 16,830,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1116,865,477 - 16,865,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0116,786,241 - 16,786,429 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0117,047,804 - 17,047,992 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:132
Interacting mature miRNAs:137
Transcripts:ENST00000411315
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2
Low 7 2 10 1 20 1 8 4 15 19 21 3
Below cutoff 21 11 30 11 27 9 37 13 19 25 29 37 2 13 11

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl373,110,992 - 73,111,182 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU2-64P COSMIC
Ensembl Genes ENSG00000223247 Ensembl, ENTREZGENE
GTEx ENSG00000223247 GTEx
HGNC ID HGNC:48557 ENTREZGENE
Human Proteome Map RNU2-64P Human Proteome Map
NCBI Gene RNU2-64P ENTREZGENE